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Query: PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SIVYAIGGLLMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRIDYLIEKELast
1 -87.200PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali  100  1SIVYAIGGLLMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRIDYLIEKE 130
2 -8.090PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  10  121..................VKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIFAIGVRMREE 232
3 -4.270PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  18  28....LISCVMLLIGILSFASTFELEVSMALMVFGTGLFLLG......................................................................................... 69
4 -3.910PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  11  1..................................ASYISVPRDLTKVKSKNLTKRQL--ICFGMAVLIGVPSFFLMKTVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPYVTDNYYAALLRQ 108
5 -3.590PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  15  10.....................................................IRRLSDASRLVPLALLAVVAAVI-----YVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGE....... 74
6 -3.340PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  13  35.LAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGLTSRFKQLVSAEGQNPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSLPLLVALGG---SVSLAYGALLLSYEARYSAATTKEE 175
7 -3.310HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  9  1........MFSLLLSTFAMMGLTFVIGFFVAGVIKLIASAADSLAFYSSHQEELARLKRIR..................................................................... 53
8 -3.050PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  9  14YGYLKQYAVETEEGSVVRIFPLTEEIENVEWLPGAIVLLTQDELKELDTNSPLVNAPQNYSKTSAEFYYNS........................................................... 84
9 -2.970HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  13  109.............................................................................................YKAILTPTNQNWNALQCFSEIRREHETIQKQLKGNKE 145
10 -2.560PB062605 Q9F6T7_BACTN/1-105 PB062605; Pfam-B_62605;  ali follow..  13  43.........RRIVLGMLAAFAV-------LYTFGRAAYDIGR-----DGSRMETGHAGRVEL.................................................................... 86
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lesley SA, Kuhn P, Godzik A., Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC. Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline. Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11664-9. Epub 2002 Aug 22.