current user: public
If you have questions about the server, please let us know.

Query: PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .
# Score Template Links and tools%idFirst MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNNLast
1 -85.000PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali  100  1MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNN 245
2 -77.500PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  75  1MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFR.. 243
3 -55.800PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  13  1MGTIVYLSIRLACACYILYKVC-----GQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEE--------------DVAEEEVECKLPLEEMRMLKEEQEEDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNKDEEKSLRAALTLHTIRETDLFEIFSSQVENK---NVIDSLMGKYLDGNGNPLSVRKTK----SVVPVSDGWKQY 223
4 -4.750PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  13  2...............................................................TLLGDKTASPYDTGTPVPGPGGMAVTYEQVATGGLPVAGLERPVVPRLSAGLKLHGEYQGSGFTEPKYIARR---------------GDGQVVQ------------------SRLLHLVASSVDGSTIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPR......... 146
5 -3.510PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  14  1MKRIVSMMVIF--TLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVL............................................................................................................................................................................ 71
6 -3.480PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  7  34................................................................TIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVLEDHLKVRESSYKYRPVYKDNI............................. 209
7 -3.310PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  7  1MKRNYFFTMLAAVLLAV--------------------------------AGANAQESAEFRPAELAGIWQLC---HYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYFIAKDLNGNELNTWFHETWKRVGMPA....................................................... 155
8 -3.040PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  9  166........................................................................FMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGIVFGSGYYKKADTL-RIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA.................... 322
9 -2.960PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  7  314......................................................................................KNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIK-----QHIEGKTVRDKQDLEKSLYTLEYKNGQIYQ--LRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN................. 452
10 -2.530PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  9  107...........................................................................................................................................................FLTLGKLGKAIQNNPQGIVASMNMNNLYIETELVSVFTLLNDAVAKGSNENMLTKTLWALNDQ........................... 176
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205