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Query: PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAKKAGKKERSQNKWRYKYRLVVLNEETFEEKVSFKLSRFNVFVVGTLSAVALIAATIVLVAFTSLREYIPGYASTDLRRQAVSLAEATDSLSQIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILRARVALEDRYNLFESLast
1 -90.500PB067216 JCVI_PEP_1096676511767 /source_dna_id=JCVI_ORF_1096676511766 /offset=0 /translation_table=11 /length=256 /full_length=256  ali  100  1MAKKAGKKERSQNKWRYKYRLVVLNEETFEEKVSFKLSRFNVFVVGTLSAVALIAATIVLVAFTSLREYIPGYASTDLRRQAVSLAEATDSLSQIISYNERYIERIRMVLKGDYAPSQIENDSLDLPFNLDTTTIALTPIREDSILRARVALEDRYNLFES 161
2 -78.600PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;  ali follow..  46  32.AMAKKEKKQLKKRLLHKYRMVILNEDTFEERVSLKLTRLNVFILVTLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYESIKKVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVALEDKYNV... 188
3 -4.580PB006205 Q3F123_BACTI/1-181 PB006205; Pfam-B_6205;  ali follow..  9  1MKEKESKSIIVYC-----FGSYMNYMRRQYEIMGYRLPR--VTWRALGYFAAVEAGLVAFRFLPPFKWVIPLFLVWGADKYKTDGKSLFSFVRVNVPKLKKHVFYGHVCVQHDVKDLPIVHSFSEEENDIHAYDVTFLPQKEEVEYVEKDEQTTI...... 179
4 -3.670PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  9  4.........................................VKILFAMALVLTMCSAFSLKKGHSKTVYAFGIAASFTDTVVFTDIQILDSAEGFLTHRDLYSYQLKNYVEDNGLQQNSTCMIYFSENRKKLEKEATK-------ILSKYKRNRNTTV... 118
5 -2.860HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  8  3.........................................................................KKKRGEERMKEEDNILKKVGKKFKVPEGYFENLTSEVMGKLPEKEGPA........................................ 52
6 -2.670PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  10  4.................................................IVSMMVIFTLLLGGMTHVQAQTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNR................................................ 67
7 -2.620PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  8  34...................................................................................DGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTE--KQYSDYL.... 105
8 -2.420PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  6  3........................................TMKFILACVLLLSPLLCQAQKNLFNKYNDMKGVSSVYISKAMMELNPNLFMKDLYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELLMKQKSTVSGSEVYVNRKGS...... 117
9 -2.410HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  9  1MDMTDNNDDVLVKKFFSENRIDV-PDDGFSRRVMRRLPDRTRRISRLWTAVCVVIGLLIFFRNKGFSVLVSCFDGIFSDVLARHEQLNNPHLLLPVAMVLILLWGVGFAVRER................................................ 112
10 -2.250PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  12  1....................................MKIERLF------IYCLLAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGEVVATPQTRVS--EVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQ 133
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.