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Query: PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKRLNLYCTILLCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKPAKVWIRTADVNYQSPRYFIAVKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIFAIGVRMREENQLLast
1 -118.000PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali  100  1MNKRLNLYCTILLCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAKIRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKPAKVWIRTADVNYQSPRYFIAVKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGITLVEVYFIQQSFSLAGQPIDIAGSLDFPNGLFEIPFIFIIYEIFAIGVRMREENQL 235
2 -8.100PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  10  19........................................................................................................................AFFIIQDVACIVMLIGAICFATMQMRQQYLGTNLTIRRLRKIMVLADIGFILAGLFMVEDSYGFVKQYLANSIGGYTTYVNIFYHNWVVILLIATALEVYTLHRIDYLIEKE... 130
3 -5.520PB015266 gi|154494998|ref|ZP_02034003.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]gi|154085548|gb|EDN84593.1| hypothetical protein PARMER_04044 [Parabacteroides merdae ATCC 43184]  ali follow..  13  1MKRIVSMMVIFTLLLGGMTHVQA-----------------QTSKAAXXXXXXXXXXXXXXXRLAKDAVMGEEAFNNAMQAITNRSFVLEANSVQPLNGRVYYVNSNTNFVSLNDGQAMVQI.................................................................................................................. 104
4 -5.320PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  8  9KRTSIFKALALCLFAAVSFTFVS.................................................................................................................................................................................................................... 31
5 -4.820PB004718 Q5LIA4_BACFN/1-189 PB004718; Pfam-B_4718;  ali follow..  6  1MKVKTSILLLLMIATALPSFGGNGNGNGTD............................................................................................................................................................................................................. 30
6 -4.740PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  14  1MKLTFKYLKLFLLAVAMINLT...................................................................................................................................................................................................................... 22
7 -4.720PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  11  1MKTKFIYVVLMALFLGSQMTLSAQNEENKEMVRALMLDDATAAKFTPIEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQ-----------------KQIMKIYQQEKSNMNKFRKEFD........................................................................ 164
8 -4.590HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  6  1MKTLKITFVMLMTALFLVLPSCS-EEVVNAFQQKYPDV-KNVKWEILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVEFDEPDSELLINFDGTLY................................................................................. 163
9 -4.490HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  12  1MRKLVKLILLCLIAYPIISIVSSCSEARPMMQCYLYKIDGETERVVNDTLDSLTITAFG-TDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIR................................................................................................................................. 112
10 -4.360PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  10  1MKRNY--FFTMLAAVLLAVAGANAQESAEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDD........................................................................................................................................................................ 65
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.