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Query: PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTVLSLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAIGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLEGRLLLast
1 -102.000PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali  100  1MTVLSLKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKELIRQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVQAIGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEISDFNSSVYYSNPEYLKYSYLEGRLL 159
2 -3.910HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  12  1............MMRRKNITWVWLLGAAFMVGCGKQVPE----NIIQPDRMENILYDYHLSISYQKEAYKNYVFEKHHITEAEFD--SSMVWYTRHTEELASLYKKLGERFRSEKKHM......................................... 110
3 -3.840PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  9  200....HLQKADLVWPNWQARALYIDFWMLGDAARELPDNSWQKHRAR--ELGNLVMNMFDPEDVSTVDKCRKFLQKEFFDKYTDDPKV........................................................................ 280
4 -3.680HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  9  131HNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSS....................................................................... 223
5 -2.880HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  11  1.....MKKLLLAMIAVAALISFAACDHNETYADQRDRELDSINAFLRNENIK----------VINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESNGIYMQVINDGCGDYIAKGKTQ-NVLCRFTEYCLAN....................... 120
6 -2.540PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  6  11..........................QFSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDLASRDAVDKTLQR---TKAEALRRIDRGLYDQPGFNKLT.......................................................... 83
7 -2.410PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  12  2.............................FVAKELRKKSEYLLYMWQIEDIIRVYGC-------SLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCREN-----LQINKVVMQALTELHTQLLASSKFPFYSAEYYRVLPFIVE........ 115
8 -2.370PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  10  262..................................................................DSLMTETLARVYVEQKNFSKA--------------QAYRILSLKYPEKSGFFADQIRAI.................................. 307
9 -2.300PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  16  146................................RTVTNAETLISELEGKPRQVNRLAATRIMRVLTFQRLTDVY----DVPYFDAGKGALEGEFTPHYTRQDSIYMDLHDELRAAVDQF......................................... 228
10 -2.300PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]  ali follow..  6  65.....IQKIHEIYPEASVENIGETDFIVTYEEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNILEFMYCIGIIIGILTFFNHFGKKRLSVDPTPMEVEMRLYENDIQTTL......................... 196
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.