current user: public
If you have questions about the server, please let us know.

Query: PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .
# Score Template Links and tools%idFirst MNENDKTEILEPVETPAENITEPSKDGRKCPKWLLPLVAAVCAVILVVAGIIGWNAYSGAKLAEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVADNALast
1 -83.800PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali  100  1MNENDKTEILEPVETPAENITEPSKDGRKCPKWLLPLVAAVCAVILVVAGIIGWNAYSGAKLAEAKEACVTAADTVRNNANEYNALLNGDAADAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADWYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDGKVADNA 199
2 -4.100PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  11  60....................................................................................................................................LRRKTRKVWPYAKLASERLSELNARLASIKSKSERRKTKIVQKYIEEQFAAELKKLTRTEGQI.... 123
3 -4.020PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  13  28.....................................................................................................ASNPLEWTALNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNN........ 120
4 -3.900PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  9  32.........................................................................................................................................KAKKEREQAVIARLIDIRKAQQEYRSLHHGMYTEH--DTLIDFVKNQKLPFVMKVGQLTDDQ 92
5 -3.540PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  14  219................................................................................................................................DFWMLGDAARELPDNSWQKHRARELGNLVMNMF-DPEDVSTVDKCRKFLQKEFFDK----YTDDPKV.... 280
6 -3.370PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  9  1.............PTHARGDRGPARKSAGNNKSGKKTTLFVVLGLIVIVYIVGVVAFSQV--NTIIAGVDVSFSNASSAATKVNSAWKHYKLTVTGDDFSWTYQPESNAAAKEIISHNEALSGKTKTTATSNEVDLDQDVDLSMLSDTFDQKKFEKDLGAAIDEFNEGRSGTFEANSSYDEQAGKTVEKARSNEKLN.. 203
7 -3.340PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  17  250....................................................................................................................................................RQITELTKQNNSLKKEHKKAINFSDKANLNMQIQVNRKSIEDLENKL.... 296
8 -3.080HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  16  2.............................................................................................................................................DEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVDDEVGILLNGNGKFEG.. 67
9 -2.940HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  10  9.................................................................................................................................................MARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNF...... 56
10 -2.870HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  7  1.............................................................................................................................................................MTPYKVSHQLKKLNNSSSLTKKNMTMEENTVHPARKLLL... 39
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 2 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.