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Query: HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;, from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDEKEVSEMQEEMMTVLVVEPMKAPYVKHIPNELEDLQQAVGGDIEMTYPFDDEVGILLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMKMPPEEEKEQKESRKNDAKQKNPAKKKNRSGDARLast
1 -5.430tr|C9J2F8|C9J2F8_HUMAN HCG22882, isoform CRA_a OS=Homo sapiens GN=PSMG4 PE=4 SV=1  ali   14  1.............MEGLVVAAGGDVSLHNFSARLWEQLVHF-----HVMRLTDSLFLWVGATPHLRNLAVAMCSRYDSIPVSTSLLGD-----TSDTTSTGLAQRLGLGGKTGL.................................................. 91
2 -4.790tr|E2QRC7|E2QRC7_HUMAN Uncharacterized protein OS=Homo sapiens GN=PSMG4 PE=4 SV=1  ali   10  1.............MEGLVVAAGGDVSLHNFSARLWEQLVHF-----HVMRLTDSLFLWVGATPHLRNLAVAMCSRYPGRPTNRCLSAI............................................................................ 70
3 -4.680sp|Q5T7W7|TSTD2_HUMAN Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 OS=Homo sapiens GN=TSTD2 PE=1 SV=1  ali   10  32....................................................................................LTGKIRIAAEGINGTVGGSKLATRLYVEVMLSFPLFK........................................... 68
4 -4.330tr|C9JU11|C9JU11_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD3 PE=4 SV=1  ali   31.APGASPGRRGEKLLVITVATAETEGYLRFLRSAEFFNRWLKKEMEKYADREDMIIMFVDSYDVILAGSPTELLKKFVQSGSRLLFSAESFCWPEWGLAEQYPEVG.......................................................... 162
5 -4.230sp|P51587|BRCA2_HUMAN Breast cancer type 2 susceptibility protein OS=Homo sapiens GN=BRCA2 PE=1 SV=2  ali   11  36.......................TPKFVKGRQTPKHISESLGAEVDPDMSWSSSLAT-------------------------PTLSSTVLIVRNEEASETVFPHDTTANVKSYFS................................................. 103
6 -4.150sp|Q9NX45|SOLH2_HUMAN Spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2 OS=Homo sapiens GN=SOHLH2 PE=2 SV=2  ali   10  7.CQEHCQISGQAKIDILLVGDVTVGYLADT---VQKLFANIAEVTITISDTKEAAALLDDCI-SAEELEAIKLIRFGKKKNTHSFKGCISGHGMDIALTEPLTMEKMSNVVKYW.................................................. 136
7 -4.120tr|Q5JXB7|Q5JXB7_HUMAN Procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1 (Fragment) OS=Homo sapiens GN=PLOD1 PE=2 SV=1  ali   1....KGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNRLLKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDRRLETKYPVVSAPNLSKLVAEWEGQDSDSDQ...................................... 162
8 -3.940sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2  ali   15  12LQEIKSSLDNHTEVVFIADFPGLHLENFVSEDLGNTSIQLLQG----------EVTVELVAEQKNQTLRE----------------GEKMQLPAGEYHKVYTTSPSPSCYMYVYVNT............................................... 102
9 -3.920sp|A6NDU8|CE051_HUMAN UPF0600 protein C5orf51 OS=Homo sapiens GN=C5orf51 PE=1 SV=1  ali   26VDEDFPEDSSSQKVKELISFLSEPEILVKENNMHPKHCNLLGDELLECLSWRRGALLYM......................................................................................................... 84
10 -3.920sp|Q92754|AP2C_HUMAN Transcription factor AP-2 gamma OS=Homo sapiens GN=TFAP2C PE=1 SV=1  ali   12  32.....................AENLGLHDMPHQMDEVQNV------------DDQHLLLHDQTVIRKGPISMTKNPLNLPCQKELVGAVM.......................................................................... 88

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Flexible structure alignment by chaining aligned fragment pairs allowing twists. Bioinformatics. 2003 Oct;19 Suppl 2:II246-II255.