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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -6.510sp|Q9HBG6|IF122_HUMAN Intraflagellar transport protein 122 homolog OS=Homo sapiens GN=IFT122 PE=1 SV=2  ali   15  3..............................PKDTPSGISKVKILFTLAKQSKALGAYRLARHRFQKSIELGTLTIRAKPFHDSEELVPCSTNNPLLNNLGNVCINC.................................... 94
2 -6.450sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2  ali   10  20.............................TGSGFVRLQEGQTLEFLVASVPKAMDYDLLLRLEPQVPEQWAELELIVQRPGPVPAHSLCGHLVPKDDRIQGTLQPCLEPGISYKLHLKLV...................... 121
3 -5.940sp|Q12836|ZP4_HUMAN Zona pellucida sperm-binding protein 4 OS=Homo sapiens GN=ZP4 PE=2 SV=1  ali   17  21.......................................................QFAVNLNQEATSPPVLIAWDNQGLLHELQNDSDCGTWIRKGPGSSATYSSCYVTEWDSHYIMPVGVEGAGAAEHKVVTERK-PMDLL 114
4 -5.710sp|Q9C0J1|B3GN4_HUMAN UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 OS=Homo sapiens GN=B3GNT4 PE=2 SV=1  ali   14  7........................................LCWLVSYSLAVLLLGCLLFLRKAAKPAGD--PTAHQPFWAPPTPRHSRCPPNHTVSSASLLTYRHCR................................... 80
5 -5.430sp|O14523|C2C2L_HUMAN C2 domain-containing protein 2-like OS=Homo sapiens GN=C2CD2L PE=1 SV=3  ali   17  1..............................................................................................VDQSEHTMVLRCQLSAEEVRFPVSVTQQSPAAVSMETYHVTLTLPP.. 46
6 -5.330tr|E9PMQ3|E9PMQ3_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZFPL1 PE=4 SV=1  ali   5  11..............................................VTNLFCFEHRVNVCEHCLVANHAKCIVQSYLQWLQDSDYNPNCRLCNIPLASRETTRLVCEALAPRGDQASLRGQLGDWFPGPPQAAGQSLSLGLP 108
7 -5.230sp|Q8WVN6|SCTM1_HUMAN Secreted and transmembrane protein 1 OS=Homo sapiens GN=SECTM1 PE=1 SV=2  ali   13  6....................................................................................DSPICTEGVVSVSWGENTVMSCNISNAFSHVNIKLRAH.................... 43
8 -5.150sp|Q9C0B7|TMCO7_HUMAN Transmembrane and coiled-coil domain-containing protein 7 OS=Homo sapiens GN=TMCO7 PE=2 SV=2  ali   22  8..............................GSGAQETCGLDRILEALKLLLSPGGSGSSSLQVTKHDVLLATLKS................................................................... 52
9 -5.130sp|A7MBM2|DISP2_HUMAN Protein dispatched homolog 2 OS=Homo sapiens GN=DISP2 PE=2 SV=2  ali   11  23.............................TSSGSLWNLHAIHSMCRMEQDQIRSHTSFGALCQRTAANQCCPSWSLGNYLAVLSNRSSCLDTTQ-AARTLALLRTCALYYHSGALVPSCLGP----GQNKSPRCAQVPTKC. 131
10 -4.930sp|Q6ZRI0|OTOG_HUMAN Otogelin OS=Homo sapiens GN=OTOG PE=2 SV=3  ali   10  290..............................................................NTTSVLCDIHCEANQEYEHPRDLAACCGSCRNVS-IADCARHHCSSTPLGAVLVRSPIS-------------------CP 368
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;