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Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -5.670sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4  ali   6  60..........................................................................................................................................QLDYRQYLSDEIDLTICSTLLAFIMELLKNSIAMQEQ-------MLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQNGMPLLKQLCDHVLLNPAI. 156
2 -5.010sp|Q68DK2|ZFY26_HUMAN Zinc finger FYVE domain-containing protein 26 OS=Homo sapiens GN=ZFYVE26 PE=1 SV=3  ali   14  4......................................................................................................................................................AAGMVFYSISDVTDKLLNTSISTALVEPTAPLREVLEDLSAFDLACSQCQLWKTCKQLLETAERRLNSSLERRGRRIDHVLLNADGIRGF... 110
3 -4.870sp|Q86TW2|ADCK1_HUMAN Uncharacterized aarF domain-containing protein kinase 1 OS=Homo sapiens GN=ADCK1 PE=1 SV=2  ali   9  1........................................................................................................................................................ANYLPQISHLLNHVPRQ------------MLLILKTNDLLRGIEAALGTRASASSFLNMSRCCIRALAEHKKKNTCS.............. 65
4 -4.760sp|O43299|K0415_HUMAN Protein KIAA0415 OS=Homo sapiens GN=KIAA0415 PE=1 SV=2  ali   14  13......................................................................................................................................................AREIQDEELKKFCSRICKLLQAEDLGPDTLDSLQRL-EKTCVDLLQATLGLPACPEQLQVLCAAILRE......................... 92
5 -4.550sp|Q9NSK7|CS012_HUMAN Uncharacterized protein C19orf12 OS=Homo sapiens GN=C19orf12 PE=2 SV=2  ali   12  2.........................................................................................................................................................MTSGQFKPVPQILMELPPAEQQRNEAAAIIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTK......................... 68
6 -4.540tr|E9PGW8|E9PGW8_HUMAN Uncharacterized protein OS=Homo sapiens GN=KIAA0586 PE=4 SV=1  ali   20  21...........................................................................................................................................................LKDAEKILRGVQNNKKVLEENLEA--IIRAKDGAAMYSLINALSTNREMSERIRKTVDEWIKTISAEIQGLLKATTVIQDE....... 101
7 -4.490sp|Q8IYB1|M21D2_HUMAN Protein MB21D2 OS=Homo sapiens GN=MB21D2 PE=1 SV=3  ali   18  3.................................................................................................................................................PELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKD---IFSML................................................ 50
8 -4.450sp|Q9Y4D8|K0614_HUMAN Probable E3 ubiquitin-protein ligase C12orf51 OS=Homo sapiens GN=C12orf51 PE=1 SV=5  ali   11  17....................................................................................................................................EKEEGGSTEAVHSGLARQVSSLLTNHLARATECCGNQAAGNDALQDVLSLLNDLSRSHIGKAILSQ---------VSKLLSLLLDQRPSPK.................... 101
9 -4.320sp|P28290|SSFA2_HUMAN Sperm-specific antigen 2 OS=Homo sapiens GN=SSFA2 PE=1 SV=3  ali   9  70.......................................................................................................................................................................SVNPPSAIEMQLRRVLHDIRNS...................................................... 91
10 -4.290sp|Q96L96|ALPK3_HUMAN Alpha-protein kinase 3 OS=Homo sapiens GN=ALPK3 PE=2 SV=2  ali   17  13................................................................................................................................................................................RTSRRILERVENNHLVQSAQTLLLSPCTSRRLTGLLDREV........................... 52
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.