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Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -5.680sp|Q86YW9|MD12L_HUMAN Mediator of RNA polymerase II transcription subunit 12-like protein OS=Homo sapiens GN=MED12L PE=1 SV=2  ali   11  11ICQQEWVGEHCLKEPERLCTDKELILDPVLSNMQAQKLL--CYPHGIKECTEGDNLQRQHIKRILQNLEQWTLRQS......................................................................................................................................................................................................................................................................................................................... 87
2 -5.660sp|Q709C8|VP13C_HUMAN Vacuolar protein sorting-associated protein 13C OS=Homo sapiens GN=VPS13C PE=1 SV=1  ali   6  1....................................................................................................................................................................................................SVDIINMLLNFEIKEVVVTLMKKSEKKGRPLHELNVLQLGME--AKVKTYDMTAKAYLKKISMQCFDFTDSKGEPLHIINSSNVTDEPLLKMLLTKADSDGPEFKTIHDSTKQRLKVSFA-------------------SLDLVLHLEAL-LSFMDFLS.................................. 137
3 -5.340sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3  ali   19  38.CSKAYVNHMMSFHSNRPSKRFCIFKKHSENLRGITLVCLNCD.......................................................................................................................................................................................................................................................................................................................................................... 79
4 -5.270sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3  ali   9  6......................................................................................................................................................ATP--DAALAGNGPVLHLELGQEEAELEEFLVKTPPGLVGVAAALQPFPALNISLKHLGTEIQNTM............................................................................................................................................................................. 72
5 -5.230sp|Q96RL7|VP13A_HUMAN Vacuolar protein sorting-associated protein 13A OS=Homo sapiens GN=VPS13A PE=1 SV=2  ali   9  1.........................................................................................................................................................................................................TFKIRFEVPKVLIEFYHLVGDCELSVVEILVLGLGAE--IEIRTYDLKANAFLKEFCLKCPEYLDENKKPVYLVTTLDNTMEDLLTLEYVKAEKNVPDLKSTYNNVLQLIKVNFS-------------------SLDIHLHTEAL-LNTINY.................................... 130
6 -5.150sp|Q6ZNQ3|LRC69_HUMAN Leucine-rich repeat-containing protein 69 OS=Homo sapiens GN=LRRC69 PE=2 SV=2  ali   14  9ICGQYFITVWLECVRFVPPPKDWKISKNLKLVPLQVLICSKCFTQRDPN.................................................................................................................................................................................................................................................................................................................................................... 58
7 -5.060sp|Q9NWR8|C109B_HUMAN Coiled-coil domain-containing protein 109B OS=Homo sapiens GN=CCDC109B PE=1 SV=2  ali   7  52................................................................................................................................................................................................STVVPPDEITVIYRHGLPLVTLTLPSRKERCQFVVKPML.............................................................................................................................................................. 90
8 -4.850sp|Q8ND82|Z280C_HUMAN Zinc finger protein 280C OS=Homo sapiens GN=ZNF280C PE=1 SV=1  ali   19  40.CNKAFVNHMMSSHSNHPGKRFCIFKKHSGTLRGITLVCLKCD.......................................................................................................................................................................................................................................................................................................................................................... 81
9 -4.730sp|Q96L50|LLR1_HUMAN Leucine-rich repeat protein 1 OS=Homo sapiens GN=LRR1 PE=1 SV=2  ali   13  5VCGRFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISCSLG........................................................................................................................................................................................................................................................................................................................................................ 51
10 -4.720sp|Q5FWF4|ZRAB3_HUMAN Zinc finger Ran-binding domain-containing protein 3 OS=Homo sapiens GN=ZRANB3 PE=2 SV=2  ali   13  26FCSLKCQEEFWIRSNNSYLRAKVFETEH---------VCQLCNVN........................................................................................................................................................................................................................................................................................................................................................ 62
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.