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Query: PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;, from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSSDLIRYDAMVYMYELQSAMVKSLast
1 -6.860sp|Q8IWV7|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1  ali   8  349...........DDERKHPVLCLF---CGA---CSQNICCQEIVNGEEV-------------GACIFH-----ALHCGAGVCIFLKIRECRVVLVEGKARGCAYPAPYLGLKRGNPLLSRERYRKLHLVWQQHCIIEESQETNQMLFGFNWQL..... 479
2 -6.710sp|Q8IWV8|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1  ali   11  312............NLPEDYSSLISNFSCPKSGGCL--VCGSLLCSQSY---CCQTELEGEDVGACTAHTYS-----CGSGVGIFLRVRECQVLFLAGKTKGCFYSPPYLGLRRGNPLLCKERFKKIQKLWHQHSVTEEIGHAQEANQTIDWQH..... 464
3 -6.650sp|Q6UX73|CP089_HUMAN UPF0764 protein C16orf89 OS=Homo sapiens GN=C16orf89 PE=2 SV=2  ali   11  60....................CLVQEPCGLSDLCSHQLLFFLWARMRGCTQGPLQQSQDYINLFCANMMDLNRRAEAIGYAYPTRDIFMENIM-----FCGMGGFSDFYKLRWLEAILSWQKQQ.................................. 180
4 -5.960sp|Q96M60|CO033_HUMAN Uncharacterized protein C15orf33 OS=Homo sapiens GN=C15orf33 PE=2 SV=2  ali   7  65...............................................................LHKFRPDRENRISESYVTLFMSIPLSRKDAFFQIYPDCLAQAIYATFHE----AFPESSYLFNDEFKESGLKPQKGFWIH------WKLKELST 164
5 -5.480sp|Q6ZT12|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2  ali   16  135IQESKWKLPHLLQLPENYNTIFQRKTCSVCTKCL--VCGTFVCLKGLCCKQQSYCECVLHSQNC-----------GTGIFLLINAIRGHRFCLWGSVYLDAHGEEDRDLRRGKPLYICKERYKVLEQQWISHTFDHINKRWGPHYNGL......... 286
6 -5.470tr|C9JUH3|C9JUH3_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCM2 PE=4 SV=1  ali   9  7..............................................................................MLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIG........ 77
7 -5.470tr|F5H0E1|F5H0E1_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCM2 PE=4 SV=1  ali   9  7..............................................................................MLTLRTKLSSQEIQQFAALLHEYRNGASIHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIG........ 77
8 -5.430sp|Q8IUB5|WFD13_HUMAN Protein WFDC13 OS=Homo sapiens GN=WFDC13 PE=2 SV=1  ali   22  27....................CTMQEDCEKGFQCCSSFCGIVCSSETF.............................................................................................................. 53
9 -5.340sp|Q5TIA1|MEI1_HUMAN Meiosis inhibitor protein 1 OS=Homo sapiens GN=MEI1 PE=2 SV=2  ali   8  1..........................C----NCLTLLVEEPLFFSKCHTVYGIEAVVRSLQGSLKMNNIELHKQGLLLFAEILTRQPEEIKLFTSSAMCRDAGRALQEAVSSPVLEVAAEALKATSAFLRKDHQSTPPVQYGELQALLE........ 119
10 -5.290sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2  ali   14  1.........................TCLSGQNCTDIKVEQLLASSLLQLDHGRLRLYHDSTN------IDKVNLFILGKDGLAQELANEIRTQSTDDEYALDGKIYELDLRPVDAKSPYFLSQLWTAAFKPH......................... 101
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.