current user: public
If you have questions about the server, please let us know.

Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .
# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -6.270sp|O60293|ZC3H1_HUMAN Zinc finger C3H1 domain-containing protein OS=Homo sapiens GN=ZFC3H1 PE=1 SV=3  ali   8  11...............................................................................................................................QDILSYNLSLIGCAETSTNEEITASAEKYVEKLFGVNKDRMSMDQMAVLLVSNINESKGHTP 72
2 -5.810sp|Q14C86|GAPD1_HUMAN GTPase-activating protein and VPS9 domain-containing protein 1 OS=Homo sapiens GN=GAPVD1 PE=1 SV=2  ali   6  34............................................................................................................................PEDNEIVCFLKVQIAEAINLQDKNLMAQLQETMRCVCRFDNRTCRLASIAEDYRKRYIAYLTRC. 101
3 -5.530sp|Q96Q15|SMG1_HUMAN Serine/threonine-protein kinase SMG1 OS=Homo sapiens GN=SMG1 PE=1 SV=3  ali   16  8.................................................................................................................................FSTNFRDTVDHIDHTQKPSLTQQVSGWLQSLEPFWVADLAFSTLLGQFLEDMEAY..... 68
4 -5.360sp|Q9C0F0|ASXL3_HUMAN Putative Polycomb group protein ASXL3 OS=Homo sapiens GN=ASXL3 PE=2 SV=3  ali   14  1............................................................................................................................................MKDKRKKKDRTWAEAARLALEKHPNSPMTAKQILEVIQKELKETSGTSP 50
5 -5.300sp|Q96AQ6|PBIP1_HUMAN Pre-B-cell leukemia transcription factor-interacting protein 1 OS=Homo sapiens GN=PBXIP1 PE=1 SV=1  ali   13  22.............................................................................................................................RQQELASLLRTYLARLPWAGQLKELPLSPAFFGEDGIFRHDRLRFRD----FVDALEDSLEE.. 80
6 -5.060sp|O75840|KLF7_HUMAN Krueppel-like factor 7 OS=Homo sapiens GN=KLF7 PE=2 SV=1  ali   20  8..........................................................................................................................................................SIFQELQLYFSALPSLEETWQQTCLELERYLQTEP 47
7 -5.040sp|Q5VZ89|DEN4C_HUMAN DENN domain-containing protein 4C OS=Homo sapiens GN=DENND4C PE=1 SV=2  ali   10  11LRKELESL--------LENEGDQVIFINQHPIIFNLVWYFRRLDLPSNL-ILTSEHCNEGVQLPLSSLSQDSKLVYIQDNINLHQEPREPLYVSWRNFNSEKKSSLLSEEQQETSTLVETIRQSIQHNNVLKPINLLSQQMKPGMKRQRSLYREILFLSLVSLGRENIDIEAFDNEYGIAYNSL..... 196
8 -5.040sp|Q96FB5|RRNAD_HUMAN Protein RRNAD1 OS=Homo sapiens GN=RRNAD1 PE=2 SV=2  ali   9  32......................................................................................................................................EEYAERLQKAGPGLRTHCYRAALETVIRRARRRPGVQGIPRVHELKIEEYVQRG. 88
9 -5.010sp|Q9HC10|OTOF_HUMAN Otoferlin OS=Homo sapiens GN=OTOF PE=1 SV=3  ali   6  91VPEHVETRPLLNPDKPGIEQGRLELWVDMFP.............................................................................................................................................................. 121
10 -4.930sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3  ali   10  37.......................................................................................................................................AKVNDLAATAYKTIKTKLPVTLRSMSLYLSNKILFKPVRNNIQQVFQKF..... 89
FFAS is supported by the NIH grant R01-GM087218-01
1 4 1 6 7 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.