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Query: HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNIYNTLGMTKACLCALAVSLVTTGCSDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWYWGNAYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGGLast
1 -72.4004l7t_A mol:protein length:523 NanU sialic acid binding protein  ali model follow..  18  1...............MLAGLSLLLFSRCDALDIDPTSSIADSNYWKTEAQFSTFNVGLHALLRECSFNFFLL-GEPRADIYGDVPFGGEATQGMERLPFNTINKENTGISNFAGMYKVINQINLMIAKTKETTLSEAGKNYYLGEAYGMRAYLYFHLLRSWGDVILYLDYTNGASNLSKAASPAEEVMKQIKEDITASEKGFGSDYSFGRYYWSMAA 208
2 -70.9005t3r_A mol:protein length:576 SusD homolog  ali model follow..  19  1MKKI--------IYIATIGITLLTTSCDDFLDRQVPQGIVTGDQIASPEYVDNLVISAYAIWATGDDINSLWNYDVRSDDCYKGGSGTEDGFNALEISKGINTTDWNINDIWKRLYQCITRANTALQSLDQMDKTYPLKNQRIAEMRFLRGHAHFMLKQLFKKIVIVNDENMEPDAYNNTTYTNDEQWQKIADDFQFAYDNLPEVQ-IEKGRPAQAA 217
3 -69.7003nqp_A mol:protein length:514 SusD superfamily protein  ali model follow..  20  1...........................GDKLDLSPIDYYGSGSYWKTEAQATAYIDGIHKHLRDAAWQHTITFGELRGGRFITGASSDGMGVSNGDIILQNFDETHTGVSKFGDLFGRITNLNLFIARVTDATLSDEMKNFYLGEVYGLRAFYYFDLYRIYGGVPLRLTADVVENKLYMARSTPKEVMTQIKSDLNKSMEYFGNMNRGKKVYWSKAA 202
4 -63.6003qnk_A mol:protein length:517 Putative lipoprotein  ali model follow..  24  1...............................GKAPLDEIADDSFWSDETLVKYYVNDLYSEISV----DGLQLQENRSDNSVSAQRDKYRASWFKFNYDMVSASDPQDDDVWEDYYVKVRKCNRFFERIGTSTIEESEKSRLTGEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYGSEKGRATKGA 183
5 -63.0003ihv_A mol:protein length:535 SusD homolog  ali model follow..  20  2................................EETRTEVEKKNYMNNAEEAKDVLLGVYRTNTLDAMYGYYLSILFNLGTDISQVEGSGNENFRIIPTNSFPTTQSEVQQTWAALYTGIYRANDFLERISNKTTDKKLATLYIAEARALRGMFYFELVRRFGNVVLMTSTQMSQNPATYVQSAPEKVYEYIEDDLLYACDILPYATESNDYRFSKGA 197
6 -62.6003jq0_A mol:protein length:493 SusD superfamily protein  ali model follow..  16  1.......................................GGTAYWKNPDQFTAFNTGLHALLREKS-YNFFLLGEPRADIYGDNPIGGEASQGMERLPFNTINKENVGISNYGDMYKIINQINQMIAKTTETTLTEATQNYYLGEAYGMRAYLYFHLLRSWGDVVLYLDYTEGQSNITKGVSPATEVMEQIKKDIQASENAFGSDYSLGRHFWSAAA 184
7 -62.3005e75_A mol:protein length:519 SusD-like protein BACOVA_02651  ali model follow..  15  1...............................DRAPEGNYVDATFYTSDEALEAATAPLYNRAWFDYNQRSIVPIGSGRANDMYSPWNYPQ-----FVTFQVTALDENLSGAWSGFYSVVTMANSVINAVETQTVSEAAKTKAIAEARLMRACAYFYMLRIWGPVILIEDNQKLVDNPVRPLNREEDVFQFIINDLNYAVDNLSEQS--DKGRATSWA 182
8 -62.3003jq1_A mol:protein length:481 SusD superfamily protein  ali model follow..  19  2.......................................TEDTFWKDETDFNLALTSCYTPLKNALNGGYYGTRGVMLRIARADEVDNDISDVYTVNRFTNSNTNSLTQGMFYQFYNALYRTNSIMQKLEEKKFSTDFQNSVKGECLFIRGFYLFQLAKEFKDAPLRLTASQSPSTFPLAKSSQADIWAQAKEDLKTAASLLPITN--KIGKPTQGA 181
9 -61.1003otn_A mol:protein length:482 SusD superfamily protein  ali model follow..  20  2.................................QPTGTMTTDSKLTSKESALALTNSAYLKNTVFNMTPGWGCNTILLLEYMTGKATNSQSNYKDFQDLLVSDRSLYIEDWWQDCYAGIANCNLALQKLGEFELDASLVNGYMAEVKFMRALYYFYLVRIFGDVPKITTVQSELGELQVSRAPVKEIYDEIIPDLLEAEQSDLAF-SDHTGRVSMGA 189
10 -60.7003hdx_A mol:protein length:478 SusD superfamily protein  ali model follow..  18  1.....................................GASETQQWKTLEDTRSALMGVYGLTRAALADNNTHWICGDLRKGDFTVYKRSDLQAVSDNELNKPYDLLKKVSNWRRFYAVINAASVFMEKAPRTSYSEQNLKYDIAQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQGKLFNKLS 198
11 -60.3003iv0_A mol:protein length:481 SusD homolog  ali model follow..  18  2................................NKSEDKLSGDDFWANETNAEAFLLSIYNSFRNATMSQLTYSGDMRCAPITAYSTGDKNNDMGELRNTYPDDARGGLIMQWDVFYTAIQDANILLAEIDKVPMDELKRSRFKAEAIFMRSLSYFFIVRAFGDVPYYTNAY---NEAPLPRTNMVIVLQNCLADLQPLLDDDPGAESSKGIRASRGS 204
12 -60.1003i4g_A mol:protein length:528 SusD-like carbohydrate binding protein BF1063  ali model follow..  28  1.........................GCD--LERYPLTDLSEETFWNSESNAELALTSLYRGSLTYNPSDWWSYHGMIMMEHLSDNAFGENNPFFKISSGNLTADNAFIKRYWETSYKRIGYCNRFLVGIQNSS-ESEKKTRMIAEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAADLPRFSAGEAGRACKQA 199
13 -59.7003l22_A mol:protein length:441 SusD superfamily protein  ali model follow..  20  2...............................DQEPPLYVNENDIFTSPTRIEATLNGLYAAIKNTGTKSLMGGKSYLVFDNRGDDISNNLVTLFNTYNMNVGITDAENADTWTYAYLAINKVNTFLQSLEGARVAGENYDRYVQEAKFVRALAYYYLNNLYPSVPLRLTAEAGTENNNMPRSTVKQIYEHILSDLENISALDTEVNTTGVTHATQAA 202
14 -59.2003mcx_A mol:protein length:477 SusD superfamily protein  ali model follow..  19  1...........................GDWLDLNTTSSVETGQAIVTLDDAQIALNGIYRLASGHSYYGYWYYGDCRAADVARITKGDGKRVSPYYEYNVLASDNLNIVLPWNTVYKVIRQTNNLIQKIESGSIDTKELNRIKSEALVMRGLSLFNLTRLFGGVPIETSPSD--PTHKPSRSTVAQCYEQVVSDMSNALSGLRQET--SNGYINYWA 203
15 -58.7003lew_A mol:protein length:495 SusD-like carbohydrate binding protein  ali model follow..  22  2..............................LDTIPTTYVDAGSVFGKTGDAEKVLNGGWNYLMETFNSNPGYGAMLRANDAMGSD-NSKYGFRTHNEFSAIYGKGGTNTLSWLLAYRVINDCNGVLDNIDAAEGTQADRNRIKGQALALRGFLYLHLASCYSCAPIYTQSTETIAAEGKPASSVSEVYAQSINDLEEALELIPETYVDAKHKIDNEV 204
16 -58.0005ck1_A mol:protein length:641 SusD homolog  ali model follow..  18  1MGS-----------SSSENLYFQGHMASDYLDVVPPEQPNIDDAMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLPYSWNTDGYWG--AYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEGRFHFDYCVDWIANQLDEAAKVLPANRTNEWGRATSTI 211
17 -55.3003ck7_A mol:protein length:527 SusD  ali model follow..  15  1.........................GIND-LDISPIDPQTGGSFDQQGVFVKGYAMLGVTGQKGIDGSP-FYRTTFNCNELPTDECLQKNQDIPQLTSISWSPSSQRTEWVYVRLGYDITQYNFFLDQTEG--MTDAETLRQRAEIRFLRALHYWYFLDLFGKAPFKEHF----SNDLPVEKKGTELYTYIQNELNEIEADMYEPRQAPFGRADKAA 198
18 -53.3003kez_A mol:protein length:461 Putative sugar binding protein  ali model follow..  16  1............................GWLDLAPSTQVDTETSINVLSDIEFTLNGIYSTMQS---SDAYSGRLVYYGDVTGDDMQAVSSTKRTGNYYRFNTKDNGPSSHWSYLYSIIQNCNLILMNVDKLSIETEYKNDLKGQALAIRGMALFDLTRIFGGVPIVKELSTIDS--KPARNTVAECYTEIISDLKNSTELLSGDF--NKGKVNRWA 197
19 -51.8005cjz_A mol:protein length:626 SusD homolog  ali model follow..  17  1.....................MGSSSSENLYFQ-----GHMASAMSSPTRALGFLYSCYGGVSTDLPSAYLGEINSTTDEYVLPYSWNTDGYWG--AYAFNTASSTNQDWLWGTTYQYIGQCYLFLQKLENAGASDAEKEQWRAECQFLVAYYHFATLRRYGPIPITDSYIPMDTPTSEGRFHFDYCVDWIANQLDEAAKVLPANRTNEWGRATSTI 196
20 -51.8003myv_A mol:protein length:454 SusD superfamily protein  ali model follow..  15  2....................................NKIPTTMAFRTVTDVDNAVNGLYDLMSG---SGYYGAAMFAYGDMKGDDSSEESGVCNTCYMFNHRPNSLNAGSLWGRPFYILREAWNILNAIAEGKIDEKKLNALKGETMAVIALCQFDLTRCFGGAPLIDHLVGTYE--NPPRSTVAQAYDFIIETLEEAVTLMSEEK--NNGRMNKYA 191
21 -51.6005cx8_A mol:protein length:481 Lipoprotein RagB  ali model follow..  14  2..............................LDRDP-EGKDFQQPYTSFVQTKQNRDGLYALLRNTENPRMHFYQELQSDMYCTTITDGNDLGILNDHGRADEDEVSGIAGYYFVYNRLNQQANAFVNNTEAASTEIANAKSFLAEGKVLQALAIWRLMDRFSFHESVTEVNSGAKDLGVIRATKAQCYDYILSRLSEAIEVLPENR-ESVLYVSRDY 214
22 -49.1003jys_A mol:protein length:499 SusD superfamily protein  ali model follow..  13  1........................................GDKAYTDAESYTKGLHKIYSVWALSGQDGALLRCWWTLQEQPTDEMKNNDAWCTEVNYMTWTTNKEPIEGVYQRCMYIVALVNEFLKNIPNAP-ESIDKESYIAQARFNRAFAYYVLMDMFALPPFITEK---NYSIEPAPLSREDLFNWIEAELNEIKPNLPSPR-SEYGVADQAV 189
23 -45.0003snx_A mol:protein length:460 PUTATIVE SUSD-LIKE CARBOHYDRATE BINDING PROTEIN  ali model follow..  15  3........................................SSDQVAVAGNAERLFNGAWYNLFETTYANIGYRALQCQDDMMASDRPKYGFNSSYQFNDVAIPSDGRTSFAWYLIYKTIDNCNTAISIKG----DSEELRQAQGQALALRAFCYLHLVQHYQCVPIYTEP-TTSGTKPKGKSTVAQVYQQIFDDLNLAQDYLTNYVDGQKFKPNTDV 192
24 -19.8005fq4_A mol:protein length:481 PUTATIVE LIPOPROTEIN  ali model follow..  11  1.........................SMDLNINDDPNYPMN------DQVTADLIFPSISASIASAVGGEIYNYAGFFAQYYEQKPESNQ---YNTLCEYTFTESSQQMDYSYRILFAGA------LEDAKQV-LEKTTNPADRFATTILRAYAFQIMVDNTSDSPY-SEALQGNANATPKWDTGETVYKGILGEIDAAEAALDGSFNKNIAQWKGFA 183
25 -18.9003fdh_A mol:protein length:499 SusD homolog  ali model follow..  14  1.........................GSEDTMD-----RINKDHDHTTSVASRFILADVITSTAFSNASGDINTYASSYIEYEVGVDNQLYYAE---VRENEPSSSSTFNNSWNGIYSSLKNARIIIDQCGEGG-RDHGNDVTRGMAEVMAAYNCALIADFFGDAPCSQAALVDEKGSPVYMTPKQEIYTQIISYLDDAIANLQKEYAGDADKWLKFA 198
26 -18.2003mx3_A mol:protein length:490 SusD homolog  ali model follow..  16  2........................ASCDKFINTDPDA--------TTKVTSSLLATGLLLDITSSSASKSFIYDELLAKQMAWGESMEDYQY-------------NVFGRSGFGGYTTLINAQKMVESV-----SDDNVNAYDGLAHFIKAYKIFYMSMEMGDLPYEEALQGELGLVRPKYNTQKEVMNFILSDLETAYELFSTAKDFDGGSISKWK 175
27 -17.5004f7a_A mol:protein length:511 Putative uncharacterized protein  ali model follow..  15  4................KINGSFDDTVKEYDFQKYTTNFETIQKGIYFNYDWGEGTTWPWQTFQNLNHDMFSGYFHDFASKFSDKNT-------------VYALEAGWTASAWNYTYNYIFP----AHKSTLITQDEAKYKHFYGATLILKVEAMHRITDTYGPIVY----SKFGKNETNSVDTQEEAYKAFFDDLDKAVDALDTYLKEGGKEDGVKS 184
28 -17.2004q69_A mol:protein length:462 Putative lipoprotein  ali model follow..  11  3..............................INHDPNT--------AEKVDPGYLFNYVAVNWAGTRTGGDFYIPLSMSSQCQVDGGLD----YGGWDESVYTISPYSTGNTWKHYYSVG--GNNLMLAIKNAEEADPVNHNAIAQCKILLAEHMYEATMLWGDIPF--TESWNGTIKYPKFDSQESVLNGVLSLLDEALQIMDLNYKGDMNKWMTLA 184
29 -17.0003ejn_A mol:protein length:474 SusD homolog  ali model follow..  15  1.........................GGNEEMNIDPDN--------ATQTHPKLLLTQICMNAFKRGTDGMYATKKVIQADGESADQYYK------------------WTRGSFGYYDNLRNVQKMGEEA-----ERVNAPVYTALTKFFRAYYFYELTLRFGDIPYSQALKGEKEEIYTPEDAQEDVFAGILQELREADEILANDYNGNSTQWRKLI 172
30 -16.8004f53_A mol:protein length:520 SusD homolog  ali model follow..  11  1.........................GCTG-YNKNP-HEPDQNDMGVDWYLVRSLALNLQDLMMPEQENFSQYVDCLMAGAFSGYVADSNLGTGWSGRYATYNPSDDWKKIPFNDFYSKF------YPDYFNL-KNQSDDELFLSLAELYRIVVMLRVTDTYGPIPY--SKVGAANAIKSPYDSQQAVYAKMLEDLDNIITVLGKFGNQSFGNTSAWY 194
31 -16.7003p1u_A mol:protein length:529 SusD homolog  ali model follow..  10  3........................ENPDKPTDDVNYNMNEPRLA-STLRGGLIIEGNVEQRLKPLQIDFY----------------SQMTVDGGGWGTKNYIQDDEWNNLVWEEYLKQIASINIVIRSLTEK--DKDAYANTIAFARIWRVYVHTLAADKFGPMPF---PAYEIVEANPPYKSLKDIYDEYFRELDAAINGFNDSYKNDVSKWKRFA 186
32 -16.5005j5u_A mol:protein length:484 RagB/SusD domain protein  ali model follow..  17  55...................................................................................................KFKKVDEYATALWRNVYANELK----VVDIIKNTSNDPAASNMNAVAKIMKVMVAQRLTDIYGDVPYSEAGLGFSQGIVTPKDKQQDIYNSFFKDLDESFTQLNASYNGDISKWKKLA 179
33 -16.4004ler_A mol:protein length:469 Putative outer membrane protein, probably involved in nutrient binding  ali model follow..  16  43...................................................................................................LTSGESKYQVYKWTRGDFDYYS----LRDVTKMSEEAGEGSAYQALAHFFRANYFYQLTLDFGSIPYTDALKAETDANYQPADSQEVVLAGILKELEEADKMLEGSYNGNLVNWRKLI 167
34 -16.3006dk2_A mol:protein length:529 SusD  ali model follow..  18  51...................................................................................................QHRMDDNEMSRPWNNLYPGAMR----LTDAIEATKDDGTQVNVYAALRIFRVYVGALLTDYYGDIPFTEAGLGYITGNSKPKDKQEDLYRFFFSELKEAAGLFDINFGGNIAEWITFA 175
35 -15.8006DMF Entity 1(prereleased)  ali follow..  16  47...................................................................................................RHTLDNNEMSRIWTSFYTQSLK----IIDAQYRTAEDAEKVNINSVLRIYRVYLMSIITDTYGDAPFSEAGLGFLEGKFNPKDKQEDIYNAFFLELEDAVNKIDPTYAGDVTKWQQLA 171
36 -15.8003sgh_A mol:protein length:499 SusD homolog  ali model follow..  14  5..............................FNTNPYQP--------SKVPASNLLSTMFNVYACPQQNACQEINCMWA-SFSGQVTATANWSFGKNIFAYYNASEGHNDSSWGRLYGYI------YPSFFLVENSTEKKGVIYAMAQLTRVYGMQLLASLQGPIPY---TQMKAGETEAPYDNEQTVWHAMFDDLDNAITILKSAATFGVGDCSKWL 185
37 -15.6005j90_A mol:protein length:508 RagB/SusD domain protein  ali model follow..  15  4..............................LYFQG-NGITLPDFEQDFNHIKGGFAPMFNNIQVLTPEWVYQLQQGLNSDIWSGYMATPTGFESGVNNTTYALLDNWNGFIWDYGYKNV------MFNAYDINKSKGKYDQFYALSLILKVEGMHRMTDTFGPIIY---SKFGSNDATIAYDSQEEVYTQMFAELDTAVAELTKRIDAGEASTFEST 181
38 -14.9003ehm_A mol:protein length:532 SusD homolog  ali model follow..  12  1..........................MAS-VNTNPYGVSDGELKYGARFMNMQQRVIPIGSPSLTTGPGNDLQNTDLISSGNYIGYFGNNNNWGFNNEANWNFTDSRMNYAYQNFYSQFLPWNEIYEIAKDS--DSPSEQAILEIANIVRNIAWLRATDVFGPIAY---NSAGDGSIAPKFDSQEVVYRSMLADLSKSVELLNTIYNGNVQNWVKLA 204
39 -14.6004mru_A mol:protein length:508 SusD homolog  ali model follow..  11  3............................TDMNRNK-YEVDSEEIGRENYDLGSTIRGLQGLVIPAQEHLYQFMEAMCGGSYAGYFGETRTGWLEKYSTYNP--KTDWLKAPFTDVISET------YPKYYAV-LQHEDAPVALALAKLLRVTIMQRVTDIYGPIPYSKGEGSESDGLNAAYDSQKDVYMRMFQELEEADQALEDNMTEGNSGFEKL. 184
40 -14.1003gzs_A mol:protein length:515 Uncharacterized SusD superfamily protein  ali model follow..  10  67.....................................................................................SPRDNKFNGSKNFTNYFMYENWVNYVYSFMVTDV--YSPWMQIKRISQDEGTRNDEIYALAQIIKIAALHRTTDMFGPIPY---SQVGKGSFKVAYDSQESVYRSFLKELEEAVQTLDDYSNKSKGDVNKWM 204
41 -13.5003cgh_A mol:protein length:516 SusD homolog  ali model follow..  12  69.......................................................................................................SNFNPKDDWSRVFKSDKIIPTLYSNLTQVKSQNTNDPVPYAIAQVIKVAAMHRVTDAFGPIPY--SQIGANGEIATPYDSQEVTYNTFFDELNAAIATLNENSNEQLGDVKKWI 192
42 -12.8004puc_A mol:protein length:504 SusD homolog  ali model follow..  16  67.......................................................................................................SNFNATNDWTRVFLISDRISTLYGNLSTVVSENTNNPVPYAIAQIIKVAAMSRVTDAYGPIPY--SKIGQDGKITIPYDTQEEVYNAFFKELDESIEVLTENRNAALGNVQKWV 190
43 -9.4005d0o_D mol:protein length:245 Outer membrane protein assembly factor BamD  ali model follow..  13  1.......MTRMKYLVAAATLSLFLAGCSG--SKEEVPDNPPNEIYAQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMQHARAAFSDFSKLVRGYPNSQYTTDATKRLLAKYEYSVAEYYTEMLRDYPDTQATRDALPLMENAYRQMQMNAQA----EKVAKIIAANSSNT............ 245
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.