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Query: HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YRYYETRYADCVNGVGNAASPVGAYASSTEWNYDNEVAYGFGYGLSYTTFTQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYTEGGLEKVAIQLLNFEKSSELAPGASEIVSVKVDLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAAGNGAHDALNNILVLQGADESKMVGTGSAAAAVAQEITEDLISRTAFSVSKTGEKISNQIPYADWNYYQPGEVTYLTRADWAGTFPKTYDQMTLTSEKLISDLNGNYYTIATDDDTSDIKWGENSNLMFYQMFGLDFDDPKWDELLDKMTLEEAQYLATYGGPSIPGVESIGTVETYMTENAGNGVAVNLNASKLast
1 -56.9005k6l_A mol:protein length:921 B-GLUCOSIDASE  ali model follow..  17  233INDYPST--ENFGDPVRDYYAEDIYVGYRYFETKSKVRYPFGYGISYTEFEHTVGEFTADI---------NSRTFTASCTVKNTGSVAGKDVAQFYVSAP--QGKLGKPEKVLVAFKKTGILNPGKEEKITVTVPFDRFASFDDT--GVTGAESCFVLEAGEYTVYEGKNVRESYKEGSFTLEENIVTEKLSKALAPMESFKRMKASENSDGTLS--------------------------VKYEDVPVSDVDEKKRRLDNMPVEIPQDFTARYSLKDVLSGSVDMEKFIARLSDDDLACIVRGEGMGSSLVTAG-------TAAAFGGVSEYLRKMDIPAVC-CDDGPSGMRLD..... 540
2 -56.6005wug_A mol:protein length:955 Beta-glucosidase  ali model follow..  21  256IEDYPST--ANFGSEERNLYEEDIYVGYRYFETPDKVLFPFGYGLSYTSFAWKVQGVK-------LEGAGTDAQLEVQVEVTNTGSFSGKEVIQLYYEAP--QGVLGKPARALGAFAKTKLLQPGESDVLTLQLPVRRMASYDDGGY--TGHKSCYVLEAGDYEFHVGNSIRNTERVTVDGKAAYQL------------------------------AELMVVEQLEEAAAPT-QRFSRLKPGRRKPDGTYEIVREEVPQRTISLKERIERRLPEAYPQTGNRGIVQAGKASLEEFVAQLSDEDLATIVRGEGMSSPKVTPGTASAFGGVGENLLEYGIPVAC-TADGPSGIRMD..... 572
3 -52.7002x40_A mol:protein length:721 BETA-GLUCOSIDASE  ali model follow..  25  551YSDVPSFPGEPKDNPQKVVYEEDIYVGYRYYDFGVEPAYEFGYGLSYTTFEYSDLNVS-----------FDGETLRVQYRIENTGGRAGKEVSQVYIKAP--KGKIDKPFQELKAFHKTRLLNPGESEEVVLEIPVRDLASFNGE---------EWVVEAGEYEVRVGASSRNIKLKGTFSVGEERR............................................................................................................................................................................. 718
4 -51.9004i3g_A mol:protein length:829 Beta-glucosidase  ali model follow..  22  664.NQHAVDPTSYPGVDNQQTYREGIHVGYRWFDENVKPLFPFGHGLSYTSFTQSAPTVVR----------TSTGGLKVTVTVRNSGKRAGQEVVQAYLGAS-PNVTAPQAKKKLVGYTKVS-LAAGEAKTVTVNVDRRQLQFWDAA-------TDNWKTGTGNRLLQTGSSSADLRGSATVNV.................................................................................................................................................................................. 828
5 -49.5004i8d_A mol:protein length:714 Beta-D-glucoside glucohydrolase  ali model follow..  22  538.NDYNTRIVS----GGSDSFSEGLFIDYKHFDANITPRYEFGYGLSYTKFNYSRLSVLSTAKSGPATGAVVQNVATVTVDIANSGQVTGAEVAQLYITYP--SSAPRTPPKQLRGFAKLN-LTPGQSGTATFNIRRRDLSYWDTASQK-------WVVPSGSFGISVGASSRDIRLTSTLSVA................................................................................................................................................................................. 714
6 -47.5003abz_A mol:protein length:845 Beta-glucosidase I  ali model follow..  24  675.QDNPA-FLNFKTEFGRVIYGEDIFVGYRYYEKQRKVAFPFGYGLSYTTFELDISDFK-----------VTDDKIAISVDVKNTGDFAGSEVVQVYFSAL--NSKVSRPVKELKGFEKVH-LEPGEKKTVNIDLELKDISYFNEE-------LGKWHVEAGEYLVSVGTSSDDILSVKEFKVEKE............................................................................................................................................................................... 839
7 -44.2005wab_A mol:protein length:751 Putative beta-glucosidase  ali model follow..  20  502INDDPS-MINWPGEEGHVDYGEGVFVGYRYYDTDKAVDYPFGFGLSYATFAIDGVNVAK----------TGANTAHVTATVTNTSDVDAAETVQVYVAPG--KAAVARPKHELKGFRKV-FLKAGESAEITFDLDERAFAYWSEKFND-------WHVEAGEYTVEVGTSSRDIAAVAVVTLDGDGKALPLDEWSTFG.................................................................................................................................................................. 679
8 -44.1005z9s_A mol:protein length:796 Glycosyl hydrolase family 3 protein  ali model follow..  19  621....PITFPRHAGQLPVYYNQIRGQHGDRYADLTQDPAFAFGEGLSYTTFAYGEPTIVGGASNADGTF-AETDTVHAEITLTNTGERAGVEIVQAYIGDIV--TSYSWTDRELKAFQRVA-LEPGETKTVAFEIPVANCTIVDPDAN--------RIVEPGEFELLIGHSSRREDLKRT..................................................................................................................................................................................... 783
9 -42.6005jp0_A mol:protein length:772 Beta-glucosidase BoGH3B  ali model follow..  24  594...YPRLINALATYDYKPCENMGQMGGNYNYDSVMDIQWPFGFGLSYTNYKYSNLKV-------NKPTFNADDELIFTVDVTNTGKVAGKESVLLFSKDLV--ASSTPDNIRLRNFEKVS-LEPGETKTVTLKLKGSDLAFVGYDGK--------WRLEKGDFKIKCGDQWMDIVCDQTKVWNTPN.............................................................................................................................................................................. 758
10 -40.9005fji_A mol:protein length:844 BETA-GLUCOSIDASE  ali model follow..  19  587.ESYGAPLLTEPNNGNQDDFNEGVFIDYRHFDKRNTPIYEFGHGLSYTTFGYSHLRVQALNSSSGGNPTLYQDLVRVSATITNTGNVAGYEVPQLYVSLG----GPNEPRVVLRKFDRIF-LAPGEQKVWTTTLNRRDLANWDVEAQD-------WVITKYPKKVHVGSSSRKLPLRAPLPR.................................................................................................................................................................................. 842
11 -40.8004zo6_A mol:protein length:731 Lin1840 protein  ali model follow..  21  559.GQIPVYYNHLRTGRPQTPENKGERYVSHYLDIPNEPFYPFGYGKSYSEFELKTSSLP--------KELNLGESLHVEVTIKNISDIAGKEVIQVYLQDVT--ASISRPVKELKAFEKV-ALQAGEEKTVTFELTSEAFSFYNHQLE--------KVQEPGLHRVFVGTSSEDVDVFEVEVGGYVL.............................................................................................................................................................................. 724
12 -40.8003u48_A mol:protein length:775 JMB19063  ali model follow..  20  579.......YYNHKNTGRPLPEGQWFQKFRSNYDVPNDPLYPFGYGLSFTKFTYGDLKL-------SSTNLKGNQTLTASIELTNSGDYDGAEVVQLYIRDLV--GSTTRPVKELKGFQKVF-LKKGETKTITFKITPEDLKFYNYDLK--------YDWEPGEFVIMVGGNSRDLKSQKINWLKDPAFLYKVVINSK.................................................................................................................................................................... 750
13 -39.4005ju6_A mol:protein length:857 Beta-glucosidase  ali model follow..  20  600.DDYGAPLIVKPNNGKQQDFTEGIFIDYRRFDYNITPIYEFGFGLSYTTFEFSQLNVQPAGGAPGGNPSLYEPVARVTTIITNTGKVTGDEVPQLYVSLG----GPDDAPKVLRGFDRIT-LAPGQQYLWTTTLTRRDISNWDPVTQN-------WVVTNYTKTIYVGNSSRNLPLQAPLKPYPGI.............................................................................................................................................................................. 857
14 -39.0005tf0_A mol:protein length:751 Glycosyl hydrolase family 3 N-terminal domain protein  ali model follow..  28  594.......FYNHKNTGRPLLEGKWFEKFRSNYDVDNDPLYPFGYGLSYTNFQYSDITL-------SAPTMGQDGSVTAMVTVTNTGKYDGAEVVQLYIRDLV--GSITRPVKELKGFDKIF-LKAGESKTVSFKITPELLRFYDYELN--------YVAEPGDFDIMIGGNSQSVKTT....................................................................................................................................................................................... 746
15 -38.7005Z87 Entity 1(prereleased)  ali follow..  21  629...IVRNVGQLP-----GYYYQKPTGRFRNYFSDSTPLYPFGHGLSYTSFGYGAPQAERASIG-------LQDRLRVSVSVRNTGDRAGQDVVQLYIRDSI--ASRARPIKEMRGFQKVL-LEPGEVQVVQFELGPEDFGYRDADGK--------LLVEPGEIVIMAGPDSQNLQETRITLV.................................................................................................................................................................................. 785
16 -38.3004iib_A mol:protein length:841 Beta-glucosidase 1  ali model follow..  18  588YGDYLVRELNNGNGAPQDDFSEGVFIDYRGFDKRNTPIYEFGHGLSYTTFNYSGLHIQVLNASSNAQVATEDELIRVSVTVKNTGRVAGDAVPQLYVSLG----GPNEPKVVLRKFDRLT-LKPSEETVWTTTLTRRDLSNWDVAAQD-------WVITSYPKKVHVGSSSRQLPLHAALPKVQ................................................................................................................................................................................ 841
17 -37.4005nbs_A mol:protein length:857 Beta-glucosidase  ali model follow..  19  601.ESYGTDVLYEPNNGNQLDYTEGVFIDYRHFDANASVLYEFGFGLSYTTFEYSNLKIEKGLHHPGGNPALYDIMYTVTADITNTGKVAGDEVPQLYVSLG----GPEDPKVVLRGFDRLR-VEPGEKVQFKAVLTRRDVSSWDTVKQD-------WVITEYAKKVYVGPSSRKLDLEEVL.................................................................................................................................................................................... 856
18 -37.3005xxl_A mol:protein length:760 Periplasmic beta-glucosidase  ali model follow..  31  595.......YYAHKNTGRPLAQGKWFEKFRSNYDVDNEPLYPFGYGLSYTTFSYGDIDL-------SRSTIDMTGELTAAVMVTNTGTWPGSEVVQLYIRDLV--GSTTRPVKELKGFQKIF-LEPGQSEIVRFKIAPEMLRYYNYDLQ--------LVAEPGEFEVMIGTNSRDVKSA....................................................................................................................................................................................... 747
19 -36.8005fjj_A mol:protein length:842 BETA-GLUCOSIDASE  ali model follow..  21  589YGSPLVKDANNGNGAPQSDFTQGVFIDYRHFDFNETPIYEFGYGLSYTTFELSDLHVQPLSGGAGGNPGLYEDLFRVSVKVKNTGNVAGDEVPQLYVSLG----GPNEPKVVLRKFERIH-LAPSQEAVWTTTLTRRDLANWDVSAQD-------WTVTPYPKTIYVGNSSRKLPLQASLPKAQ................................................................................................................................................................................ 842
20 -35.6005ae6_A mol:protein length:767 BETA-XYLOSIDASE  ali model follow..  17  576YPAEYVHQFPQNDMNLRPDGKSNPGQTYIWYT--GKPVYEFGSGLFYTTFKETLASHPKSLKHPGYTYSEQIPVFTFEANIKNSGKTESPYTAMLFVRTS-NAGPAPYPNKWLVGFDRLADIKPGHSSKLSIPIPVSALARVDSH--------GNRIVYPGKYELALNTDESVKLE........................................................................................................................................................................................ 750
21 -22.4003rrx_A mol:protein length:822 Exo-1,3/1,4-beta-glucanase  ali model follow..  11  595.............................LNDADYDPLFAYGYGLTYQDNINVPVLSEKT--SPKKTVNSDSHPLFVRSLAKNMTWQLADTSTQKVLASGA--SATSGD-KQSLLMQSVN-LSYAEGRGFNWRAQAALSLSYLEPTP------LDSKFSTGYLELKMRIDKAPE.......................................................................................................................................................................................... 728
22 -12.1002kut_A mol:protein length:122 Uncharacterized protein  ali model follow..  15  4............................................................PITLSKETPFEGEEITVSARVTNRGAAEAHNVVAVYLGNPAQGG-------VEIGRDTISRIPVGGTGLARVQWKATR--------------KLAGRAANPGVPVYAVVDPDNRVAES...................................................................................................................................................................................... 101
23 -9.9804be5_A mol:protein length:262 RBMA  ali model follow..  7  147....................................................NGLTIDIKNQFGINSVESTGGFVPFTVDLNNGREGEANVEFWMTAVGPDGLIIPVNAREKW-------VIASGDTYSKVRGINFDK-------------------YPAGEYTIQVVDIVSGERVEQSMTVVKK............................................................................................................................................................................... 256
24 -9.5003ay2_A mol:protein length:167 Lipid modified azurin protein  ali model follow..  14  54................................................QFNTKDIQVSKAC--------------EFTITLKHTGTQPKASMGNLVIAKAEDMDGVFKDGVGAADVAHTKLIGGGEESSLTLDPAKL---------------------ADGDYKFACTFPGHGALMNGKVTLVD................................................................................................................................................................................ 167
25 -9.2302l0d_A mol:protein length:114 Cell surface protein  ali model follow..  15  9..............................................................SLTPVTVVPNTVNTMTATIENQGNKDSTSFVSLLVDG------------IVVDTQTVTSLESENSTNVDFHWTLD--------------------GTANSYTLTVNVDPENAVNEG...................................................................................................................................................................................... 93
26 -9.2002aan_A mol:protein length:139 auracyanin A  ali model follow..  11  22.....................................................EIGSKGEELAFDKTELTVSAGQTVTIRFKNNSAVQQHNWI---LVKGGEAEAANIANAGLSAIAESPLANGNETVEVTFTAP-----------------------AAGTYLYICTVPGHYPLMQGKLVVN................................................................................................................................................................................. 139
27 -9.0002kl6_A mol:protein length:114 Uncharacterized protein  ali model follow..  14  10..............................................................IKGPDVVGVNKLAEYEVHVKNLGGIGVPSTVRVYINGTLYK-------------NWTVSLGPKEEKVLTFSWTP---------------------TQEGMYRINATVDEENTVVEL...................................................................................................................................................................................... 92
28 -9.0003isy_A mol:protein length:120 Intracellular proteinase inhibitor  ali model follow..  10  1.......................................................GMENQEVVLSIDAIQEPEQIKFNMSLKNQSEFSTGQKFELVVYDSEHK----SKEKMFTQAFQNLTLESGETYDFSDVWKEV--------------------PEPGTYEVKVAENLKQVQAVQQFEVK................................................................................................................................................................................. 120
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.