current user: public
If you have questions about the server, please let us know.

Query: HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst LEDGDFVKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGYSGLDPELDISNVQAPGVEYRDTYPTTRSFTFGVNIGFLast
1 -22.2005t3r_D mol:protein length:1041 SusC homolog  ali model follow..  43  968VENGSFLKLRNIQLGYTVPISKKMRMDRLRFYCSAQNLLTIKSFTGEDPENP-----------NFSYPIPVNITFGLNIGF 1041
2 -13.5005fq6_B mol:protein length:984 SUSC/RAGA FAMILY TONB-LINKED OUTER MEMBRANE PROTEIN  ali model follow..  33  899LVDKSYVKLRSVVLGWDLPKRAKTPFQAVKVSAYGNNLFVWTPSSFIDPEMTGNDLEGNYGEY-TANPSSRRFGFNLMVKF 984
3 -8.5304fbg_A mol:protein length:405 Putative reductase TDE_0597  ali model follow..  15  328VDEENRIRIDDWELEEDV----QKAVSALMEKVTGENAESLTDLAGYRHDFASNGFDVEGINY.................. 387
4 -8.0801s72_E mol:protein length:178 50S ribosomal protein L6P  ali model follow..  9  77VTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPD................... 138
5 -7.3004bko_A mol:protein length:417 PUTATIVE REDUCTASE BURPS305_1051  ali model follow..  18  337VDAEGRLRADRLELDPAV----QARVLELWDQVTDDNLYTLTDFAGYKAEFRLFGFGIDGVDY.................. 396
6 -7.2704eue_A mol:protein length:418 Putative reductase CA_C0462  ali model follow..  15  339FDDKGRLRMDDLELRKDVQDE----VDRIWSNITPENFKELSDYKGYKKEFNLNGFDLDGVDY.................. 398
7 -7.0903zu2_A mol:protein length:422 PUTATIVE REDUCTASE YPO4104/Y4119/YP_4011  ali model follow..  15  341MDQEGRLRADYKELDPEV----QNQVQQLWDQVTNDNIYQLTDFVGYKSEFNLFGFGIDGVDY.................. 400
8 -6.8905xi0_A mol:protein length:400 Enoyl-[acyl-carrier-protein] reductase [NADH]  ali model follow..  18  326VDEKNRLRLDDWELREDI----QQHCRDLWPQVTTENLKDLTDYVEYKEEFKLFGFGVDGVDY.................. 385
9 -6.8203s8m_A mol:protein length:422 Enoyl-ACP Reductase  ali model follow..  21  341VDEQNRLRLDDWELRDDVQDA----CKALWPQVTTENLFELTDYAGYKHEFKLFGFGRTDVDY.................. 400
10 -6.6703mlq_E mol:protein length:71 Transcription-repair coupling factor  ali model follow..  14  17...GQYLGLETREVGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHPGTTDD............................... 64
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.