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Query: HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNDLIVDVKLWGESVGSLYWEKESNAALFDYERKFIRSGLDISPIIMPISQYRNTPYRFLENRTDCFKGLPGLFADSLPDTFGNQIINEWFASKGLSGEEITPLDRLCYVGKRGMGALEFEPSSPINGMNESSVLHIEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVGTLast
1 -45.5004pu3_A mol:protein length:454 Toxin-antitoxin system toxin HipA family  ali model follow..  13  19AKTLTLEMHLGDLMIGELSFDATADTFAVHYTKDWQQSGFPLSP-TIPLDGTGT------------SNQISMFLVNLLPENKGLDYLIESL-----GVSKGNTFALIRAIGLDTAGAIAFVPKGALLPETQLRPIKAEEVIQRIEDPTMWPGKPRLSVAGVQPKLNLFYNGKE 178
2 -42.3005k98_A mol:protein length:448 Serine/threonine-protein kinase HipA  ali model follow..  15  1MSRPKLVTWMNNQRVGELTKL-ANGAHTFKYAPEWLASRYARPSLSLPLQRGNI-----------TSDAVFNFFDNLLPDSPIV----RDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMEKLTEARLEEVLTAYKADIPDFRISVAGAQEKTALLRIGND 168
3 -40.1002wiu_A mol:protein length:446 PROTEIN HIPA  ali model follow..  15  1MPK--LVTWMNNQRVGELTKL-ANGAHTFKYAPEWLASRYARPSLSLPLQRGNI-----------TSDAVFNFFDNLLPDSPIV----RDRIVKRYHAKSRQPFDLLSEIGRDSVGAVTLIPEDETVTHPIMEKLTEARLEEVLTAYKADIPDFRISVAGAQEKTALLRIGND 166
4 -8.4204jpo_C mol:protein length:100 26S protease regulatory subunit 7 homolog  ali model follow..  14  6.............................................................................LPDLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGA--CTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN......... 94
5 -7.6704a3v_B mol:protein length:95 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG  ali model follow..  14  7.............................................................................LPDLEGRANIFRIHSKSMSVERGIR-WELISRLCPNSTGA--CTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN......... 95
6 -7.6502krk_A mol:protein length:86 26S protease regulatory subunit 8  ali model follow..  11  4.............................................................................HPNEEARLDILKIHSRKMNLTRGIN-LRKIAELMPGASGA------------------EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 80
7 -6.8703mhv_C mol:protein length:117 Vacuolar protein sorting-associated protein 4  ali model follow..  14  2.............................................................................SPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGS------------------DIAVVVKDA............................. 50
8 -6.7304cx8_A mol:protein length:244 PSEUDORABIES VIRUS PROTEASE  ali model follow..  16  49.GPLPINIHRPRCDIGAVLAVVDDDRGPF---------GVVNCPQLGAVLARAVGPDFFGDMRLSDEERLLYLLSNYLP---SASLSSRRLAPGEAPDETLFAHVALCVIG-RRVGTIVVYDASPEAAVAPFRQLSARARSELLARAAESPDRERVWHMSEEALTRALLSTA. 209
9 -6.4103fnc_A mol:protein length:163 Putative acetyltransferase  ali model follow..  11  3.............................................AMDFHIRKATNSDAEAIQHVATTSWHHTYQDLIPSDVQDDFLKRFYNVETLHNRISATPFAVLEQADKVIGFANFIELEKGKSELAAFYLL-TELLEVGMTLFHVPLPMFVNVEKGNETAIHFYK... 135
10 -6.1204dmb_A mol:protein length:204 HD domain-containing protein 2  ali model follow..  8  44..........................................................................ESVSDHMYRMAVMAMVIKDDRLNKDRCVRLALVHDMAECIVGDIAPADNIPKEEKHRREEEAMKQITQLLPE-YETQSSAEAKFVKQLDQCEMILQA.. 151
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.