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Query: HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKEHKEVSALLQQAKQERRCCYGTSDAQRRALKRRLHAGELVSPYKNLYADRTLWNTMTREQQSLQVIRALSAIHPQWVFAGLSAACVYGLQHNYSLHDGTVHIASKSGIGGGDEARLNRIYINRIPTRKHNGILLTTPARTLLDCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSENGGESLMRGQITELSFGSSCWQCSSLast
1 -16.3001zel_A mol:protein length:298 hypothetical protein Rv2827c  ali model follow..  14  15...PTWASRVVSGLARDRPVVVTKEDLTQSAIRELRRIGWLVQLPKGTWAFIPPGEAAISDPYLPLRSWLARDQNAGFMLAGASAAWHLGYLDRQPDGRIPIWLPPAKRLPDGLASYVSVVRIPWNAADTATGLPALGPEALLVQIATRPWADLVPHLDDLVAD--CSDERLERLLSGRPTSAQRASYLLDSGG............................. 242
2 -8.0202b1w_A mol:protein length:127 Caspase recruitment domain protein 4  ali model follow..  15  1....................................................................................................................................GAMESHPHIQLLKSNRELLVTHIRLVDNLLKNDYFSAEDA-EIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLL............... 79
3 -7.8001dgn_A mol:protein length:89 ICEBERG (PROTEASE INHIBITOR)  ali model follow..  12  1...........................................................................................................................................ADQLLRKKRRIFIHSVGLLDCLLEDEVISQEDMNKVRDENDTVMDKARVLIDLVTGKGPKSCCKFIKHLCEEDPQLASKMGLH. 89
4 -7.1905fna_A mol:protein length:85 CASPASE-1  ali model follow..  13  1...........................................................................................................................................ADKVLKEKRKLFIRSMGLLDELLQTRVLNKEEMEKVKRENATVMDKTRALIDSVIPKGAQACQICITYI............... 75
5 -6.9004olo_A mol:protein length:109 BMC domain protein  ali model follow..  15  34..............................................................................................................................................AIGLIQGRMIEMVCAADVAEKAVGVTVEDIRGSCPQN--DTASVEAAMDEIRKKETEAGEGWLE................. 103
6 -6.8304xht_A mol:protein length:103 Protein timeless homolog  ali model follow..  1...................................................................................................................................GSHMVLSNENLGQSLHQEGFSIPLLWLQNCL---------IRAADDREEDGCSQAVPLVPLTEENEEAMENEQFQQLLRKLGVRPPASGQET 83
7 -6.6904ox8_A mol:protein length:128 Carbon dioxide-concentrating mechanism protein CcmK  ali model follow..  14...............................................................................................................................LYFQGAMASETMGIALGMIETRGLVPAIEAADAMTKAAEVRLIGREFVGGGY--ETGAVNAAVRAGADACERVGDGLVAAHI----IARPHREVEP 110
8 -6.5504uz0_A mol:protein length:95 NUCLEOLAR PROTEIN 3  ali model follow..  16  4.......................................................................................................................................AQERPSETIDRERMRLVETLQLLDALLARGVLTGPEY-EALDALPDAERRVRRLLLLVQGKGEAACQELLRCAQRTAGAPDPAWDWQ. 94
9 -6.4702dbd_A mol:protein length:107 Caspase recruitment domain protein 4  ali model follow..  15  6.......................................................................................................................................SGHPHIQLLKSNRELLVTHIRLVDNLLKNDYFSAEDA-EIVCACPTQPDKVRKILDLVQSKGEEVSEFFLYLL............... 81
10 -6.4202dl1_A mol:protein length:116 Spartin  ali model follow..  1....................................................................................................................................GSSGSSGEPAEIKIIREAYKKAFLFVNKGLNTD--ELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRT 89

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.