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Query: HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKVEVHYFDELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTADVKRLKRLast
1 -7.4804d10_G mol:protein length:222 COP9 SIGNALOSOME COMPLEX SUBUNIT 7A  ali model follow..  14  47.......FGELLDMVRELAESDFASTFRLLTVFAYGTDYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRN---RQLEDLVIEAVYADVLRGSLDQRNQRLE--VDYSIGRDIQRQDLTLQEWCVGCEVVLS-----GIEEQVSRANQHKEQQLGLK-----------------QQIESEVANLKK 222
2 -6.1703qb7_A mol:protein length:132 Interleukin 4  ali model follow..  10  10.......LQEIIKTLNSLTEQKTLCTETVTDIFAASKN-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLRVIMQ...................................................... 124
3 -5.9202hzt_A mol:protein length:107 Putative HTH-type transcriptional regulator ytcD  ali model follow..  16  23LTHGKKRTSELKRLMPNI--TQKMLTQQLREL-------EADGVINRIVYNQVPPKVEYELS.......................................................................................................................................... 75
4 -5.8804g6v_B mol:protein length:111 CdiI  ali model follow..  10  14........GAAESDLNKIRSNHSELFEGKFLISPVRDADFSLKEIAAEHGLVAESFFLVSLNDKNSADLIPIVSKILVDGFN...................................................................................................................... 87
5 -5.8802b91_A mol:protein length:129 Interleukin-4  ali model follow..  11  7.......LQEIIKTLNSLTEQKTLCTETVTDIFAASKN-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRDLKALDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMR...................................................... 121
6 -5.8801bbn_A mol:protein length:133 INTERLEUKIN-4  ali model follow..  12  11.......LQEIIKTLNSLTEQKTLCTETVTDIFAASKD-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEADQSTLENFLERLKTIMR...................................................... 125
7 -5.8602b90_A mol:protein length:129 Interleukin-4  ali model follow..  11  7.......LQEIIKDLNSLTEQKTLCTETVTDIFAASKN-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKALDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMR...................................................... 121
8 -5.8401itl_A mol:protein length:130 INTERLEUKIN-4  ali model follow..  11  8.......LQEIIKTLNSLTEQKTLCTETVTDIFAASKN-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMR...................................................... 122
9 -5.8302fsw_A mol:protein length:107 PG_0823 protein  ali model follow..  22  34INRRIIRYGELKRAIPGI--SEKMLIDELKFL-------CGKGLIKKKQYPEVPPRVEYSLTGEKVLPIIDEIAKFGMENL....................................................................................................................... 107
10 -5.8204x90_A mol:protein length:380 Group XV phospholipase A2  ali model follow..  10  104.....SYFHTMVESLVGW-------YTRGEDVRGAPYDWRRAPNENGPYFLALREMIEEMYQLYGGPVVLVAHS------MG--------------MYTLYFLQRQPQAWKDKYIRAFVSLG.............................................................................. 195

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.