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Query: HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIMNPNILNKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSDVVAQFYAYLSGCMFNDPVGMAIYAELHYMMSSLMLGEWFELast
1 -7.2303wpu_A mol:protein length:542 Beta-fructofuranosidase  ali model follow..  11  245.........RDPFTFEDPAHPGETFMVFEGNSAMYAETVDDVNASGATYQIGNVGLAKAKN-WEFLILSANCVTDQTERPQIYFKDG---KSYLFTISHRGTFAAGLDGPEGVYGFVGDGIRSDY.. 382
2 -7.0201ioq_A mol:protein length:129 LYSOZYME C  ali model follow..  9  4.....GRCELAAAFKRHGLDNYRGYSLGNWVCAAKFESNNTQATNRNTDGSTDYGIFQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAK-KIVSDGNGMNAWVAWRNRCKGTDVQAWIR 125
3 -6.7401bb4_A mol:protein length:130 LYSOZYME  ali model follow..  12  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACLK-RVVRDPQGIRAHVAWRNRCQNRDVRQYVQ 126
4 -6.7003ln2_A mol:protein length:130 Lysozyme C  ali model follow..  11  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAK-RVVDDPQGIRAWVAWRNHCQNRDVRQYVQ 126
5 -6.7001c7p_A mol:protein length:134 LYSOZYME  ali model follow..  11  6.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 130
6 -6.6302bqd_A mol:protein length:130 LYSOZYME  ali model follow..  11  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGVFQINSRYWCNDGKTPGAVNAAHLSCSALLQDNIADAVAAAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 126
7 -6.6302bqc_A mol:protein length:130 LYSOZYME  ali model follow..  11  2.VFERCELARTLKRLGMDGYRGVSLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNAAHLSCSALLQDNIADAVAAAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 126
8 -6.6202bqk_A mol:protein length:130 LYSOZYME  ali model follow..  11  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNAAHLSCSALLQDNIADAVAAAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 126
9 -6.6101ix0_A mol:protein length:130 lysozyme  ali model follow..  11  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQANSRYWCNDGKTPGAVNAAHLSCSALLQDNIADAVAAAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 126
10 -6.6102bqf_A mol:protein length:130 LYSOZYME  ali model follow..  12  2.VFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNAAHLSCSALLQDNVADAVAAAK-RVVRDPQGIRAWVAWRNRCQNRDVRQYVQ 126
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.