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Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNKLast
1 -14.7004dcb_A mol:protein length:297 Coagulase/fibrinolysin  ali model follow..  8  99ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFT---GGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFGGG........................ 291
2 -13.6002x4m_A mol:protein length:298 COAGULASE/FIBRINOLYSIN  ali model follow..  8  103ATNVNHANEYDLNVKGWLLDENYKAGITAGYQETRFSVIGYNQRFSMPYIGLAGQYRINDFELNALFKFRDLTFREKTSGSRYYGTVINAGYYTPNAKVFAEFT---GGTQTIDKNSGDSVSIGGDAAGISNKNYTVTAGLQYRFGGG........................ 295
3 -11.0006FOK Entity 1(prereleased)  ali follow..  16  567NV-DARIMGGELGASYQ-LTGNWKTDASLAYAWGKNSSDDRALPQ--LEARFGLTYEEGDWSAGSLWRVVAPQ-KDFDKSAGFGVFSLNGAYRTRNVKLSAGVDNLFDKDYTEHLNKAGAGFGFSANETVPEPGRTFWTKVDFSF........................... 723
4 -10.9002f1c_X mol:protein length:286 Outer membrane protein G  ali model follow..  10  105DTANMQRWKIAPDWDVK-LTDDLRFNGWLSMYKFANDLNTTGYADTRVETETGLQYTFNEVALRVNYYLEGFNMDDSRNNGEFSTQEIRAYLPHDFNRVGLFYGYDFQNGLSVSLEY--AFEWQDHDEGDSDKFHYAGVGVNYSF........................... 280
5 -10.6002k0l_A mol:protein length:216 Outer membrane protein A  ali model follow..  9  48...RNDQLGAGAFGGYQ-VNPYLGFEMGYWLGRMAYKGSVDNGAFKAQGVQLTAKLGYDDLDIYTRLGGMVWRADSKG-NYASTGVSRSEHDTGVSPVFAGGVEWAVTRDIATRLEQWVNNIGDAGTVGTRPDNGMLSLGVSYRFGQEDAAPVVAPA............... 204
6 -10.4001i78_A mol:protein length:297 PROTEASE VII  ali model follow..  10  103DTQLNYANEFDLNIKGWLLEPNYRLGLMAGYQESRYSAIGYKQRFKMPYIGLTGSYRYEDFELGGTFPKGRITYRSKVKDQNYYSVAVNAGYYTPNAKVYVEGATNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF........................... 297
7 -10.1002por_A mol:protein length:301 PORIN  ali model follow..  7  143SEDDAQEMAVAAAYTFGNY--------TVGLGYEKIDSPDTALMADMEQLELAAIAKFGATNVKAYYADGETPVAAAATAVDHKAYGLSVDSTFGATTVGGYVQV--------------------LDIDTIDDVTYYGLGASYDLGGGASIVGGIADNDLPNSDMGV..... 297
8 -9.5007prn_A mol:protein length:289 PORIN  ali model follow..  12  157SSLVTEEFGIAADWSND------MISLAAAYTTDAGGIVDND------IAFVGAAYKFNDAGTVGLNW------YDNGLSTAGDQVTLYGNYAFGATTVRAYV----------------------SDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETDVGV..... 285
9 -9.0801bh3_A mol:protein length:289 PORIN  ali model follow..  12  157SSLVTEEFGIAADWSND------MISLAAAYTTDAGGIVDND------IAFVGAAYKFNDAGTVGLNW------YDNGLSTAGDQVTLYGNYAFGATTVRAYV----------------------SDIDRAGADTAYGIGADYQFAEGVKVSGSVQSGFANETDVGV..... 285
10 -9.0502f1t_A mol:protein length:197 Outer membrane protein W  ali model follow..  6  30GFSVTNNTQLGLTFTYM-ATDNIGVELLAATPFRHKIGTRATGDIAT-YVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVGVDYLNRDWLVNMSV-----WYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF........................... 191
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.