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Query: HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGALYYFLTGFVATSLast
1 -7.5601kvd_A mol:protein length:63 SMK TOXIN  ali model follow..  29  2........................................................................SLRWRMQKSTTIAAIAGCSGAATFGGLAGGIVGCIAAGILAILQGFEV...................................... 49
2 -7.0003iyz_A mol:protein length:340 Aquaporin-4  ali model follow..  13  123.....IAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLV---LIITFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTG---ASMNPARSFGPAVIMGNWENHWIYWV--GPIIGAVLAGALYEYV...... 262
3 -6.9505vms_A mol:protein length:548 Potassium voltage-gated channel subfamily KQT member 1  ali model follow..  16  94.AEYVVRLWSA-YVGVWGRLRFARKPISVIDLIVVVASVIVLCVGSNGQVFATSAIRGIRFLQILRMLHVDRQGGTWRLLGSVVFIHRQELITTLYIGFLGLIFSSYFVYLAEKDAIDSSGEYQFSYADALWWGVVTVTIGKTIASCFSVF....... 260
4 -6.7001i3q_F mol:protein length:155 DNA-DIRECTED RNA POLYMERASE II 23KD POLYPEPTIDE  ali model follow..  20  78........................................QRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDP--------------------------LRIAMKEL-KKIPLVIRR.................................. 136
5 -6.5905x4z_F mol:protein length:155 RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III  ali model follow..  18  78........................................ERTTTPYLTKYERARILGTRALQISMNAPVLVDIEGETDP--------------------------LQIAMKEL-RKIPLVIRR.................................. 136
6 -6.4103h0g_F mol:protein length:142 DNA-directed RNA polymerases I, II, and III subunit RPABC2  ali model follow..  20  68........................................DRTTTPYMTKYERARILGTRALQISMNAPVLVDLEGETDP--------------------------LQIAMKEL-KKIPLLVRR.................................. 126
7 -6.3605x33_A mol:protein length:523 LTB4 receptor,Lysozyme,LTB4 receptor  ali model follow..  10  20...........LLAMILLSVSMVVGLPGNTFVVWSILKRMRKRSVTAL------MVLNLALADLAVLLTAPFFLHFLTWGTWSFGLAGCRLCHYICSMYASVLL-ITAMSLDRSLAVAPFLSQKVRTKTAARWLLVGIWGASFLLATPVLAF...... 156
8 -6.1303jcu_X mol:protein length:117 Photosystem II Reaction Center X protein  ali model follow..  26  58.......................................................................................................TGLTAAALTASM-MVPDVAEAAELAPSLKNFLFSIAAGAIVGAVV.......... 106
9 -6.0801qkl_A mol:protein length:127 DNA-DIRECTED RNA POLYMERASE II 14.4 KD POLYPEPTIDE  ali model follow..  21  53...........................................TTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDP--------------------------LLIAMKEL-RKIPIIIRR.................................. 108
10 -6.0803jb9_c mol:protein length:639 Pre-mRNA-splicing factor cwf19  ali model follow..  8  426....VISLSHRAYVSLPTQPELAKY--CLIVPTGHRINTLSCDEDDEIRNFMKCIAMFDSMNLGVIFYENAPSPQRYMHTAIEC-----PVSKRILSLAPAYFREALSTSDEEMVKELGYFHVWFSIDGGYGHVVRHDQVPRVFASML.......... 600
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.