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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -7.1805wda_A mol:protein length:134 General secretion pathway protein G  ali model follow..  32  2.................................TLLEIMVVIVILGVLASLVNLMGNKEKADRQKVVSDLVALEGA.................................................................. 46
2 -7.0502pos_A mol:protein length:94 SYLVATICIN  ali model follow..  12  4..........................TKECAFTEFFKLAPLASNPALSVCQDASGWQMLPPAGYPTPEQLKLMCGTAE----------CFTL--IDAIKALNPNDCILVFGDVRLNVK........................ 83
3 -6.9405jt8_A mol:protein length:333 Blo t 1 allergen  ali model follow..  14  121............................QKARLTIRQQGSCGSCWAFAAAGVAESLYSIQKQQSIELSEQELVDCTYNRYDPSYQCNGCTEAFKYMIRTGLVEERCDPDVEGQRYHVSGYQQLRYHSSDMYTIQQHGPVV.. 251
4 -6.7802y00_A mol:protein length:315 BETA-1 ADRENERGIC RECEPTOR  ali model follow..  14  2............................GAELLSQQWEAGMSLLMALVVLLIVAGNVLVITQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFR.. 118
5 -6.7404gbr_A mol:protein length:309 Beta-2 adrenergic receptor  ali model follow..  13  1.................................DEVWVVGMGIVMSLIVLAIVFGNVLVIFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFK.. 112
6 -6.7004mqs_A mol:protein length:351 Muscarinic acetylcholine receptor M2  ali model follow..  10  36.................................KTFEVVFIVLVAGSLSLVTIIGNILVMNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLT.. 147
7 -6.3906d9h_R mol:protein length:389 Chimera protein of Muscarinic acetylcholine receptor M4 and Adenosine receptor A1  ali model follow..  12  65......................................AAYIGIEVLIALVSVPGNVLVINQALRDATFCFIVSLAVADVAVGALVIPLAILINIGPQ---YFHTCLMVACPVLILTQSSILALLAIAVDRYLRVKIPLR.. 169
8 -6.3203kj6_A mol:protein length:366 Beta-2 adrenergic receptor  ali model follow..  13  30.................................DEVWVVGMGIVMSLIVLAIVFGNVLVIFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFWCEFWTSIDVLCVTASIETLCVIAVDRYFAITSPFK.. 141
9 -6.3104rha_A mol:protein length:146 Outer membrane protein A  ali model follow..  13  76..........................................................LSEKRAQSVVDYKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRVEIEVK........................ 138
10 -6.3001kqy_A mol:protein length:273 Hevamine A  ali model follow..  10  12......................................................NEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPAGHCNPAAGGCTIVSNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVA...... 97
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;