current user: public
If you have questions about the server, please let us know.

Query: HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270
# Score Template Links and tools%idFirst MPYRLLPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKITFRYGTCPCCRCDAYLYALast
1 -9.0202i1j_A mol:protein length:575 Moesin  ali model follow..  10  1.....MPKSMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRA---------------KFYPEDVADELIQEITLKLFYLQVKNAILSDEIYCPPETSVLLASYAVQARHGDHNPAVHGPGFLANDRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEKIAQDLEMYGVNYFEIRNKKNTELWLGVDLNIYEKGFPWSEIRNISFN............... 251
2 -8.2801e5w_A mol:protein length:346 MOESIN  ali model follow..  11  1.....MPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA---------------KFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEKIAQDLEMYGVNYFSIKNKKGSELWLGVDLNIYEQGFPWSEIRNISFN............... 251
3 -8.1804yl8_A mol:protein length:303 Moesin  ali model follow..  11  5...EFMPKTISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKAFSTWLKLNKKVTAQDVRKESPLLFKFRA---------------KFYPEDVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLASYAVQSKYGDFNKEVHKSGYLAGDKLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEKIAQDLEMYGVNYFSIKNKKGSELWLGVDLNIYEQGFPWSEIRNISFN............... 257
4 -8.1003wa0_A mol:protein length:301 Merlin  ali model follow..  10  2......PLGSPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFLA---------------KFYPENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEKIAQDLEMYGVNYFTIRNKKGTELLLGVDLHIYDPSFPWNEIRNISYS............... 254
5 -7.9604zri_A mol:protein length:324 Merlin  ali model follow..  11  20...RKQPKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF----------------LAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEKIAQDLEMYGVNYFAIRNKKGTELLLGVDLHIYDPSFPWNEIRNISYS............... 271
6 -7.7704rm8_A mol:protein length:587 Ezrin  ali model follow..  12  3......PKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRA---------------KFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEKIAQDLEMYGINYFEIKNKKGTDLWLGVDLNIYEKGFPWSEIRNISFN............... 252
7 -7.7502ems_A mol:protein length:322 Radixin  ali model follow..  11  2....SMPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRA---------------KFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEKIAQDLEMYGVNYFEIKNKKGTELWLGVDLNIYEH-FPWSEIRNISFN............... 253
8 -7.7002lkm_B mol:protein length:172 Mortality factor 4-like protein 1  ali model follow..  9  14...............................................................................................................................KPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTLYKFERPQYAEILADHPDAPMSQVYGAPHLLR--LNYLHDFLKYLAKNSATLFSASDYEVAPPEY.............. 167
9 -7.5904ccg_X mol:protein length:88 E3 UBIQUITIN-PROTEIN LIGASE FANCL  ali model follow..  16  8..............................................................................................................................................................................................................RAILEKSDFTMDCGICYAYQLDGTDQVCDNSQCGQPFHQLYEWTSRQSFNIIFGECPYCS....... 76
10 -7.5801isn_A mol:protein length:323 merlin  ali model follow..  11  2......PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF----------------LAKFYPENAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLASYAVQAKYGDYDPSVHKRGFLAQEELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEKIAQDLEMYGVNYFTIRNKKGTELLLGVDLHIYDP-FPWNEIRNISYS............... 250
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 3 2 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.