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Query: HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRNLast
1 -10.7005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  1MKP----MSDYDIPTTENLYFQGAMRGVD-PLQPDVYLLVNA-NMDAEDFEDRVHSLAMLVFDSNTGEKVSSSIGSGTSTYVFTVKLKPGQRDFFFVANIPN................................................................ 115
2 -9.3201r1z_A mol:protein length:263 ERGIC-53 protein  ali model follow..  8  1.........MGSSSSGLVPRGSHMAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDS........................... 134
3 -9.1703wht_A mol:protein length:246 Protein ERGIC-53  ali model follow..  7  1.............MNHKVHMDGVGGDPAVALPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDS........................... 130
4 -8.9304mfi_A mol:protein length:436 Sn-glycerol-3-phosphate ABC transporter substrate-binding protein UspB  ali model follow..  6  1MDPL-NRRQFLALAAAAAGVTAGCAGMGGGGSVKSGSGPIDFWSSHPGQSSAAEREL----------------GRFQDRFPTLSVKLIDAGKDYKFNAALIGTDVPDVVLLDDRWWFHFALSGVLTALDDLFGQVGVDTTDYVDSLLADYEFNGRARSTPLFYYNK 161
5 -8.8801gv9_A mol:protein length:260 P58/ERGIC-53  ali model follow..  7  2.......QFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIF-----FDSFD--NDGKKNNPAIVVVG.... 153
6 -8.8604jg9_A mol:protein length:174 Lipoprotein  ali model follow..  7  1MKK-------IGTMLLFSILIAGCTQAQPDLKKPKKEAIATSSTQVNAPSFFHLSVLKDETPSFIQEKIPLKGIEEKIAMADSPIIANEKNEIMWYFLDPEMPTGKLSIIALKQGSVTPTPLLFQQESSEPTWTTSNTIDSTTNELPLTMSLPSSGLWVLNIYVNE 163
7 -8.8404pw2_A mol:protein length:585 D-glucuronyl C5 epimerase B  ali model follow..  8  1MRYKTLIVICALLSLLTVLLWNKCTSEKA-QPPPSPKIDSHPQQPQPPEPPPVVGGVRYEEIDCLINDDATIKGRREGSEVYMPFSWMEKY--FEVYGKVVQYDGYDRFEFSHSYSKVYAQRE-GVFMSFEGYNVEVRDRVKCISGVEGVPLSTQWGPQGYFY... 179
8 -8.8303p24_A mol:protein length:397 BFT-3  ali model follow..  12  1MKNVK-----LLLMLGTAALLAACSNEAD---SLTTSIDAPVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNRQVHVSMDKRTKIQLDNENVRLFNGRDKDSTNFILGDEFAVLR............................................. 113
9 -8.7504gkx_A mol:protein length:261 Protein ERGIC-53  ali model follow..  8  1MGSSSSGLVPRGSHMDGVGGDPAVAL-----PHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVKAAFENWEVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIF-----FDSF----DNDGKKNNPAIVIIGNN 156
10 -8.1106anv_A mol:protein length:452 anti-CRISPR protein AcrF1 fused with C-terminal MBP tag  ali model follow..  9  41VGA--RDFDSTEQLESWFYGLPGSGLGRIENAMNEIS------RRENPLEKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSG----LLAEITPDKAFQDKLYPFTWDAVRYNGKAVEALSLIYNK 201
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.