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Query: HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQVDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLERCPTVGEILENNPSALKNLKGLast
1 -10.2005oqj_6 mol:protein length:461 Suppressor of stem-loop protein 1  ali model follow..  17  356.......................VCSLVCPCCDLMLILXXXXXXXXXXXXX---AEVPTTEKFRSEDCFSCQXXXXXXXXSRYRCE--DCKQ----EFCVDCDVFPGCES................. 456
2 -9.9705c1z_A mol:protein length:405 E3 ubiquitin-protein ligase parkin  ali model follow..  20  300........................CGAFCRECKE-TTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGG----CMHMKCPQPQRLEWCWNC......................... 389
3 -9.6702fiy_A mol:protein length:309 Protein fdhE homolog  ali model follow..  12  164WSHWLLGLEEGAVVETESRTLCPACGLSCSLC-------------------------ACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQGY...................... 262
4 -9.5904zyn_A mol:protein length:425 E3 ubiquitin-protein ligase parkin  ali model follow..  20  320........................CGVFCRDCKE-ATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCNVPIEKNGG----CMHMKCPQPQKLEWCWNC......................... 409
5 -9.4806djx_A mol:protein length:432 RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase  ali model follow..  15  310.......MGLLVEPECKKVTCQNGCGYFCRNCLQ-SGSCEYSVDPNRAAEARWDEASKVTIKVMTKPCPKCRTPTERDGG----AMHMVCTRAGGFEWCWIC......................... 417
6 -9.1904ui9_S mol:protein length:447 F-BOX ONLY PROTEIN 5  ali model follow..  14  336.............................SLKKDAQTKLSNQGDQKGSTYSRHNEFSEVAKTLKKKACIRCNSPAKDCYLQRATCKREGC----GFDYCTKCLC-KDCSDGKLLKASTKKSKKNLR. 445
7 -9.0905c9v_A mol:protein length:330 E3 ubiquitin-protein ligase parkin  ali model follow..  20  225........................CGAFCRECKEGTTTQAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEKNGG----CMHMKCPQPQRLEWCWNC......................... 314
8 -9.0604k95_A mol:protein length:470 E3 ubiquitin-protein ligase parkin  ali model follow..  20  365........................CGVFCRDCKE-ATSQAYRVDQRAAEQARWEEASKETIKKTTKPCPRCNVPIEKNGG----CMHMKCPQPQKLEWCWNC......................... 454
9 -8.9302pv0_B mol:protein length:386 DNA (cytosine-5)-methyltransferase 3-like  ali model follow..  10  35...RDLIAYEVKANQRNIEDICICCGGICAPCKDKFL----------------DALFLYDDDGYQSYCSICCSGETLLICGNPDCTRCYCVHAMSNWVCYLCLPSSRSGLLQRRRKWRSQLKA.... 166
10 -8.5506gcs_A mol:protein length:728 75-KDA PROTEIN (NUAM)  ali model follow..  13  75...................AIAGNCRM-CASCAYPVAPGMVVRTDTERVKQARENVMEMMLQNHPLDCPVCDQGG--------ECDLQDQSMRYGMNRCIHCTR---CVRF................ 192

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.