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Query: HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRRKNITWVWLLGAAFMVGCGKQVPENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSEGERRATMGFNILFDNDSVVGRVKDITCSGVQTLYIKPDSAFAIKSVNGFIYYMDSDSSTNKPGLIINNITLTRYHEPVDTMTVAGKDSLAVERRVGTDSMVTEKKADSIQSVDIRKNVPVRMNPREMKENNAADHSHPDRPQRIKRRNLast
1 -13.5005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  9  1.MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAED---------FEDRVHSLAM----------------VFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLKPGQRDF------FFVANIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNNNGFPMSRMYSNQTVTTITQPLPFKPDGENNVK------LQRVVAKLDVNIVEGVENLQKIELCNAN.............................................................................. 213
2 -10.3005d0o_E mol:protein length:123 Outer membrane protein assembly factor BamE  ali model follow..  13  1.MRCKTLTAAAAVLLMLTAGCSTLERVNYLTANDVSKIRVGMTQQQAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNI...................................................................................................................................................................................................................................... 104
3 -8.7805d0o_D mol:protein length:245 Outer membrane protein assembly factor BamD  ali model follow..  11  1.MTRMKYLVAAATLSLFLAGCSGATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-ADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSK.............................................................................................................................................................................................. 149
4 -8.4206f0k_H mol:protein length:182 ActH  ali model follow..  15  1.MKRYPGLIGLLVVLVSVAGCRGGVALTLAQIEAASEQVADLEQALAELEALRLLARRDEVAQYEAILEAHQQAVLEFEHWKEQVAAHPGDYRRANRTLGAITARHEALLQQYADVAWA.............................................................................................................................................................................................................. 129
5 -8.3803utk_A mol:protein length:133 Lipoprotein outS  ali model follow..  7  1MHVSSLKVVLFGVCCLSLAACQTPAPVKNTASSQLASLVAASKYLRVQCERSDLPDDGTILKTAVNVAVQKGWDTGRYQS--------PQLSENLYQGLLKDGTPKATQCSSFNRT................................................................................................................................................................................................................. 121
6 -8.0703p24_A mol:protein length:397 BFT-3  ali model follow..  11  1.MKNVK-LLLMLGTAALLAACSNEADSLTTSIDA--PVTASIDLQSVSYTDLATQLNDVSDFGKMIILKDNGFNQLDNENVRLFNGRDKDSTNFILGDEFAVLRFYRNG........................................................................................................................................................................................................................ 118
7 -8.0605ok8_A mol:protein length:175 LPP20 lipoprotein  ali model follow..  12  1MKNVKKILGMSVVAAMVIVGCSHGAPDWVVGDLE-SGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTQKDLENEKT--ASGKRSISGTDTEKISQLVDKE.......................................................................................................................................................................................................................... 136
8 -7.3805xpq_A mol:protein length:136 Uncharacterized HTH-type transcriptional regulator Rv0081  ali model follow..  12  36.........................PARI----RILELLVERDRSVGELLSSDVGLESSNLSQQLGVLRRAGVVAARRDGNAMIYSIAAPDIAELLAVARKVLARVLSDRVAVLEDLRAGGSAT......................................................................................................................................................................................................... 130
9 -7.2904hz9_B mol:protein length:150 Putative periplasmic protein  ali model follow..  7  1.MGSSENLYFQGHMGSAQAAVSQNSPEAAAIS------FYTWFIQHDSDQTYPLSEPDIERYVATDTVGRLRNDYAHAGPPNGV................................................................................................................................................................................................................................................. 77
10 -7.1902nc8_A mol:protein length:182 Lipoprotein LppM  ali model follow..  8  1.....MGGGGGRENLYFQGHMLRVRASITISPDDLVSGEIIAAAKPKNSKDTGPALDGDVPFSQKVAVSNYDSDGYV------------------AVFSDLTFAELPQLANMNSDAAGVNLSLRRNGNIVILEGRADLTSVSDPDADVELTVAFPAAVTSTNGDRI............................................................................................................................................................... 146
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;