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Query: PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759], from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GAITFVEREAAAYDEAAVMANKQARLDAEKSINMVGSGVMHEKSPAHSGCPGSMARSIFRRPAAASGEAVQASSYEQAAVECVQNTTDKTVNQQAGDIYNYERPSQLTQWPVQIKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKGHVTLIGCPKLDSVDYSEKLTEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRILLast
1 -8.2501qrz_A mol:protein length:246 PLASMINOGEN  ali model follow..  16  9..........................................................................................EPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGQHFCGGTLLTAAHCLEKSPRPSSYKVILGAHQEV---NLEPHVQEIEVSRLFLEPTRKDIALLKLSSP.................................. 110
2 -8.1501rjx_B mol:protein length:247 Plasminogen  ali model follow..  16  10..........................................................................................EPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLLTAAHCLEKSPRPSSYKVILGAHQEV---NLEPHVQEIEVSRLFLEPTRKDIALLKLSSP.................................. 111
3 -7.4304qt8_C mol:protein length:253 Hepatocyte growth factor-like protein  ali model follow..  8  6.......................................................................................KRVDRLDQRRSKLRVVGGHPGNSPWTVSLRNRQGQHFCGGSLLTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERS.................................. 113
4 -7.3601eq9_A mol:protein length:222 CHYMOTRYPSIN  ali model follow..  13  3....................................................................................................GGKDAPVGKYPYQVSL---GASILDNNNVLTAAHCVDGLSN------LNRLKVHVGTNYLSESGDVYDVEDAVVNKNYDDVALVHLTNPIKFN-DLVQPIKLSTNDEDLESNPCTLTGWGST. 128
5 -7.1902bm2_A mol:protein length:245 HUMAN BETA2 TRYPTASE  ali model follow..  15  3....................................................................................................GGQEAPRSKWPWQVSL---GGSLIHPQWVLTAAHCVGPDVKD-----LAALRVQLREQHLYYQDQLLPVSRIIVHPQFYDIALLELEEP.................................. 100
6 -7.1601kdq_A mol:protein length:131 CHYMOTRYPSIN B, B CHAIN  ali model follow..  16  3....................................................................................................NGEDAIPGSWPWQVSLQDKTGFHFCGGSLVTAAHCGV-----------TSDVVVAGEFDQEENIQVLKIAQVFKNPKFNDITLLKLATP.................................. 96
7 -7.1203f1s_B mol:protein length:283 Vitamin K-dependent protein Z  ali model follow..  16  55....................................................................................................EKRAPDLQDLPWQVKLTNSEGKDFCGGVILTTAKCSLLH---------RNITVKTYFNRTSQDPLMIKITHVHVHMRYDDLSLLELELPVCTPEKDFAEHLLIPRTR................ 173
8 -7.0802f9n_A mol:protein length:245 alpha I tryptase  ali model follow..  15  3....................................................................................................GGQEAPRSKWPWQVSL---GGSLIHPQWVLTAAHCVGPDVKD-----LATLRVQLREQHLYYQDQLLPVSRIIVHPQFYDIALLELEEP.................................. 100
9 -7.0201lto_A mol:protein length:245 alpha tryptase I  ali model follow..  15  3....................................................................................................GGQEAPRSKWPWQVSL---GGSLIHPQWVLTAAHCLGPDVKD-----LATLRVQLREQHLYYQDQLLPVSRIIVHPQFYDIALLELEEP.................................. 100
10 -6.6601fn8_A mol:protein length:224 TRYPSIN  ali model follow..  10  3....................................................................................................GGTSASAGDFPFIVSISRNGGSLLNANTVLTAAHCVSGYAQSGFQ-------IRAGSLSRTSGGITSSLSSVRVHPSYSGLAILKLSTS--IPSGGNIGYARLAASGSDPVAGSSATVAG... 122
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.