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Query: PB002589 gi|91201099|emb|CAJ74158.1| hypothetical protein [Candidatus Kuenenia stuttgartiensis], from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IKEELVRCIWFGQHIEKKNLRTDDGLRLEILSPGWWNNEEGPDFKHAEFFLEGKGLIRGSVEIHVFASDWIHHKHENQKTYDAVCLHVVMWNDLKGRCVKNFSGKVIPQITLSLYLEAELDEIIETIDVGSYIGNKQVIPGYCNLEMRKQKITQQWIGGFLDYAGDERILQKAKKYEKWIENKPFERVLYEAIMESLGYKNNKKPFLMLASLVTAETIQSFVPEYTPAQEKKIIAQSLLLGMAGLLPLNEEETKRFDDETIQYFDRIFSTWQGIKPKIHQTPLTRESWSYTGIRPANFPDRRIVAIANILSEHLDNGLFRYILRIFQKRDDTKKNTRGFKSFVNEFLSPFLETHDAYWSYRYTPGGKKLNKPQKLLGKERTSNIFVNVIIPVMLVYARKHNDKALEERLHYIYRNYTPHPSTSVTKFMGTRIFGTSMVSNKVIHSARRQQGLYQLFKDFCENDTISCNKCALast
1 -6.7801iqq_A mol:protein length:200 S3-RNase  ali model follow..  8  5....QFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLW-----PSNMVGQLEIIWPNVFDRTKNNLFWDKEWMKHG-DNENHYFETVIKMYISKKQNVSRILSKAK-----------IEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY......................................................................................................................................................................................................................................................................................... 200
2 -6.6105fld_A mol:protein length:161 FIBER PROTEIN  ali model follow..  17  47..................NFRKTRVTSITITILGEFLTFKGADFKSSTLKDELLIPLEGAVQLNTAPSTALCIFITTDHVYRELMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVT.................................................................................................................................................................................................................................................................................................................................................................. 146
3 -6.4401yna_A mol:protein length:194 ENDO-1,4-BETA-XYLANASE  ali model follow..  7  84LVEYYIVENFGTYD-TDLGTVECDGSIYRLGKTTRVNAPSGTQTFDQYWSVRQDKRTSGTVQTGCHFDAWARAGLNVNGDHYYQIVATEGYFSSGYARITVAD................................................................................................................................................................................................................................................................................................................................................................................ 192
4 -6.1401hix_A mol:protein length:190 ENDO-1,4-BETA-XYLANASE  ali model follow..  9  85LVEYYIVDNWGTYRPTGTYKVTSDGGTYDVYQTTRVNAPSGTKTFNQYWSVRQSKRTGGSITAGNHFDAWARYGMPLGSFNYYMIMATEGYQSSGSSSISVS................................................................................................................................................................................................................................................................................................................................................................................. 190
5 -6.1304f7u_Q mol:protein length:129 Methylosome subunit pICln  ali model follow..  16  20.............................................NIKLKLGDKVVGEGTVYIAQNTLSWQPTELAEG-EWKQVSLHGISSNPRKCIYFMDEQFGEVTECWLMPEDIATVDTMYSAMTT...................................................................................................................................................................................................................................................................................................................................................... 119
6 -6.0503mf9_A mol:protein length:193 Endo-1,4-beta-xylanase  ali model follow..  12  87LVSYHIVESWGTYRPTGTYKVTTDGGTYDIYETWRYNAPSGTRTYQQFWSVRQQKRTSGTITIGNHFDAWARAGMNLG-SHDYQIMATEGYQSSGSSTVSISEG............................................................................................................................................................................................................................................................................................................................................................................... 193
7 -6.0103mfc_A mol:protein length:194 Endo-1,4-beta-xylanase  ali model follow..  10  87LVSYHIVESWGTYRPTGTYKVTTDGGTYDIYETWRYNAPSGTRTYQQFWSVRQQKRTSGTITIGNHFDAWARAGMNLGSHDYQIMATEGYQSSGSSTVSISEGG............................................................................................................................................................................................................................................................................................................................................................................... 194
8 -5.9204uob_A mol:protein length:278 ENDONUCLEASE III-3  ali model follow..  11  1............................................................................................................................................................MENLYFQGAVPSRSPQASSKSRPLSEQNPPPVWFGEYLSRLRDTYAPELPPPRQFPDPLGGL----------------IRTIL------------SQQNTRRVAQRQWEVLTATYPQWEAALLDGPDGIEA-----LKSARMKADYIYGILAHLQEHHGGLSLRFLREF-------PHTPEGHEQARQALAAL------------------------PGVGHKTVALVLLFDLRPAMPV-------DGNMERAAKRLELVPAAWNSHKVERWYAEVMPADWETRFALHISGVRHG-----RDTCRSKHPLCPQC. 245
9 -5.9002pe4_A mol:protein length:424 Hyaluronidase-1  ali model follow..  8  8LPNRPFTTVWNANTVVANPGQTFRGPDMTIF----YSSQLGPYYTPTGEPVFGGLPQNASLIAHLARTFQDILAAIPAPDFSGLAVRPRWAFNWDTKDIYRQRSRALVQAQHPDWPAPQVEAVAQD----------------------------------FQGAARAWMAGTLQLGRALRPRGLWG---FYGFPDCYNYDFLSPNYTGQCPS--------------GIRAQNDQLGWLWGQSRALYPS-MPAVLEGTGKSQMYVQHRVAEAFRVAVAAGDPNLPVLPYVQIFYDTTN--------------------------HFLPLDELEHSLGESAAQGAAGVV---------LWVSWENTRTKES---------QAIKEYMDTTLGPFILNVTSGALSQALCSGHGRCVRRTSHPKALLLLNPASFSIQLTPGGGPLSLRGALSLEDQAQMAVEFC-----RCPWCE 411
10 -5.8301pvx_A mol:protein length:194 PROTEIN (ENDO-1,4-BETA-XYLANASE)  ali model follow..  7  84LVEYYIVENFGSSNPSSGSTDSCDGSTYTLGQSTRYNAPSGTQTFNQYWSVRQDKRSSGTVQTGCHFDAWASAGLNVTGDHYYQIVATEGYFSSGYARITVAD................................................................................................................................................................................................................................................................................................................................................................................ 192
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 5 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.