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Query: PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217], from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQENLast
1 -11.1006dne_A mol:protein length:434 Bromodomain-containing protein 4  ali model follow..  49LNLPDYYKIIKTP------DMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFL--EETEIMIVQAKGRGRGRKETGTAKPGVSTVPNTTQASTPPQTQTPQPNPPPVQATPHPFPAVTPDLIVQTPVMTVVPPQPLQTPPPVPPQPQPPPAPAPQPVQSHPPIIAATPQPVKTKKGVKRKADTTTPTTIDPIHEPPSLPPEPKTTKLGQRRESSRPVKPPKKDVPDSQQHPAPEKSSKVSEQLKCCSGILKEMFAKKHAFYKPVDVYCDI-IKHPEAREYRDAQGADVRLMFSN 385
2 -10.6004v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  483..........................................................................ENKESEQRIKKEMLQANAMGLRDEEAPSGNEEDELFGEKKIDEDGEKIKKALQKTELAALYSSDEDEINPYLSESDIENKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDIIDAIGDGKVKEFGKSIRR-RYPGAENKKLMFAIVKKLCRKVDN 722
3 -9.8505fyw_Q mol:protein length:735 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  488..........................................................................ENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVKEFGKFIRR-KYPGAENKKLMFAIVKKLCRKVGN 727
4 -9.3505oqm_Q mol:protein length:747 Transcription initiation factor IIF subunit alpha  ali model follow..  500..........................................................................ENKESEQRIKKEMLQANAMGLRDEEAPSENEEDELFGEKKIDEDGERIKKALQKTELAALYSSDENEINPYLSESDIENKENESPVKKEEDSDTLSKSKRSSPKKQQKKATNAHVHKEPTLRVKSIKNCVIILKGDKKILKSFPEGEWNPQTTKAVDSSNNASNTVPSPIKQEEGLNSTVAEREETPAPTITEKDIIEAIGDGKVKEFGKFIRR-KYPGAENKKLMFAIVKKLCRKVGN 739
5 -9.1303zn3_A mol:protein length:291 ANAPHASE-PROMOTING COMPLEX SUBUNIT 8  ali model follow..  13  247................................................................................................................................................................................................................................................................IIFPNSRYLKTQRALLTYDSRDFDEAESLFENILTNDPAENLYF............. 290
6 -8.9703cue_A mol:protein length:219 Transport protein particle 23 kDa subunit  ali model follow..  15  167................................................................................................................................................................................................................................................................TSNLAIQIADNFLRKVY----------CLYSDYVMKDP-RSNLFDEKVKKMVENLQ. 219
7 -8.6902c2l_A mol:protein length:281 CARBOXY TERMINUS OF HSP70-INTERACTING PROTEIN  ali model follow..  1...................................................................................................................................................................................................................................................................SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRMQQPEQALAD 60
8 -8.4504z29_A mol:protein length:325 Magnetotaxis protein MtxA  ali model follow..  10  218..............................................................................................................................................................................................................................................VWLSATEDKALVDGVARVKAASTGDEFA--LGNYLDSKGVTVAAMDAYRKHFASHKDDNDMRQKEALVYNEQLE. 305
9 -7.9902yhc_A mol:protein length:225 UPF0169 LIPOPROTEIN YFIO  ali model follow..  17  9...........................................................................................................................................................................................................................................................................ATAQQKLQDGNWRQAITQLEALDNRYPFGPAYYPLAQAAIDRFIRL 70
10 -7.8305wft_A mol:protein length:118 PelB  ali model follow..  17  1....................................................................................................................................................................................................................................................................EDRTLLADLARLGEWTGNGPRALGFWKQLLAGADDPALRFDSAIELLAPIGA. 64

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.