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Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -7.6405xjc_x mol:protein length:703 Protein CASC3  ali model follow..  12  59.........................................LHLRRVESGGAKSAEESECESEDGIEGDA-VLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKEHDKFR------EDEQAPKSRQELIALY-----------------------GYDIR 245
2 -6.8704u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  11  25.........................................KMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDPNIYSKYADGSDRIIKPEYDSDDSDAETQNTIGNIP----YDINGKRIMRPAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELEL. 236
3 -6.3306ez4_A mol:protein length:135 RNA polymerase II-associated protein 3  ali model follow..  6  52.....................................................................................................................................................FQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETE-KKIARALFNHIDKSGLKDSSVEELKK............. 131
4 -6.0905hwk_A mol:protein length:240 Glutathione-specific gamma-glutamylcyclotransferase  ali model follow..  9  8.............IWVLGYLIYK---PSHYTHRIPAIIHGFARRFWQSSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYIPPEHAQEVREYLNVREQEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETVDETAKVIAVSHGYEYLAKLEQALAQMPIMKERGRITDHYLTALLETVNK.................. 230
5 -5.9005hwi_A mol:protein length:240 Glutathione-specific gamma-glutamylcyclotransferase  ali model follow..  9  8.............IWVLGYLIYK---PSHYTHRIPAIIHGFARRFWQMSTDHRGTPANPGRVATLIPYEDIIRQTAFLKNVNMYSESAPIQDPDDLVTIGVVYYIPPEHAQEVREYLNVREQEVEVHLETNREHEAELGEMLEQLPRHNKSGKRVLLTSVYIGTIDNEAFVGPETMDETAKVIAVSHGYEYLAKLEQALAQMPIMKERGRITDHYLTALLETVNK.................. 230
6 -5.8005h0q_A mol:protein length:202 Lipid binding protein  ali model follow..  7  3.....................................................................................................................................................YGVEIDEQYLRVMEEYKDKEVITQADMAKVALQRKNVYQDQAEKRQAELKAEYGVGVCVLVRVYNATGG......................... 71
7 -5.7904v1n_Q mol:protein length:734 TRANSCRIPTION INITIATION FACTOR IIF SUBUNIT ALPHA  ali model follow..  9  561.........................................NKENEPSVKKEEDIDSLSKSKKSSPKKQQKKTANAHVHKEPNLRVKSIKDCVIILKGDKKVLKSFPEGEWNPHAAKIKDISGNESNAVSAPIKKEKPLESIVVQEKETPAPLITEQDI---IDAIGDGKVNVK---------------EFGKSIRRRYPGAENKKLMFAIVKK............................. 715
8 -5.5805nzb_A mol:protein length:132 Profilin-2  ali model follow..  13  42.................................................................................................................................QFKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQ......................... 130
9 -5.5201cqa_A mol:protein length:133 PROFILIN  ali model follow..  13  44..................................................................................................................................FKPQEITGIMKDFEEPGHLAPTGLHLGGIKYMVIQGEAGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLIDQ......................... 131
10 -5.5202gmy_A mol:protein length:153 Hypothetical protein Atu0492  ali model follow..  16  61......................................................................................................................................................HDGLSEQWINLMSVWRESPVYTEQERAGWVDAVTKIAETGAPDDAFETLRAHFSDEEIVKIT............................... 124
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.