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Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -65.5003t2l_A mol:protein length:308 Putative cell adhesion protein  ali model follow..  15  1........................................GSDDREMDDGRWKASALRVPLQVSSAVIKQEVVTRLAPDPVPLTEGAIGIFLSGTEPESGQEDSGYKVIDNRKYVYSEGHWGPP---------TANDTIYLVGNDADVCAYYPYKDSYTDKT---VIPLQSQDYVETEDIYYALNTMI------NGFTPAITFDMVHAYSLVELKISRENYFMPCEISKITL---KNSNLIKKGTINIAVDGSIHSSETGNYDLTTVTDASPHTLSVGESYVCRVLMIPVPLKIERTDGLSVSLVIDGQQMLVEIPYS------ELGEFRQGEKYVIGLKIKGTEITVKALEWEDEEVNGGNKYPVE...................... 308
2 -56.7003ufi_A mol:protein length:297 hypothetical protein BACOVA_04980  ali model follow..  11  2.............................................DEESGKADRAYKPIEIYGNINEVVNNVQETRAVGAAWGSDDRIGVTVEADEDNATANAVDTYINIQYRNETGGSFR------VVNEGSTDNNIRLKGEGEFTLNAYYPYQGANGTLPGTISGADQTTDKQPQIDFLFAQATG-------VRAESPVTFDFSHKMTKIILKFKATNGAT------LNNMKVYLKSLQLEGSFNVTTGEAVAKSGATPNSELSMD----IAKPAEGEMTASIILFPQDMPE----KVLLEVRMNDETYTQYMP---------VQNLESGHAYPYNVTFENPAMTIEIEDWIVEDDKD............................. 290
3 -54.2004qb7_A mol:protein length:359 Uncharacterized protein  ali model follow..  12  2..............................................EMTEMNPDTNRTIGLDVYTEVQTRG---TETTTSTLKANAGFGIFAYQTSSAGWNSEKGNT--------TPNFMYNEHATWTSDSWGYTNLRFWPDDKKITFFAYAPYESKPEVGTDQKIT-KTSNNWKDMIDLVTDCHTAIQDQTN-ESNKGTVQFKFSHVLTQIANIKVKPDVNL-GTDTKIFVTGLKLDTLYNKAVYKFDNDTWEAISPDASYFSTEQDLSDFLNKTTTDSDTEALYFIPVNNKNGTTNAGDLKLKIVTDTSNLTSTITNKEVSLPKNTFKKGTKHTYVLTIKMNAIKINMEGWTDDSDSD............................. 354
4 -53.9004k4k_A mol:protein length:282 Putative cell adhesion protein  ali model follow..  9  1..........................................GGEN--TPQPTDGRVALEATSGIRMNTRA------YDKTWEAGDAIGIYMLNGDATDGNGNRKYTTAQTAENGSFTAAEG------------QTIYFPVDASQRDFVAYYPYRETLAD-GNVYTVDVSVQTPQKDIDLMGAAKV-----EGKDKTDPKVAFVFTHKLVKLDITIKADGTSLTD--ADLAGTTVSISNQQTAATYNVVTGGDATVTTGTTKEIVL----------HTDGLKAEGIVLPAASTAGMALTFTVP-GLEGQAFHWDVNSA-----AQSKAFVAGSKYLYTITISKAGVEVSVEDWTPGNGGG............................. 276
5 -53.4003sy6_A mol:protein length:291 Fimbrial protein BF1861  ali model follow..  11  17...................................................................SASSDDRPSTRGIINDNTYALGVFRTTANTYAPLY-------------------NVKHIYSGGEWGADDVIKV-DYRNASFFAYYPYHTATGNYAGGTTLTLQAQLFNAGEDICYGAGEASGGGPVSVYNPFVEFLNMKHAYARLRLTLTRGEKFDKTKKCNIQNITFKNANFYLTRSLDIASTAGATGGSAVAAGYVHNPNVN---IATGKSVTYEYMFPPQPLDGS---KLTILVTVDGVTRSCDIST-------LGSSLDSGKYYGVSLTFTDVGIILVVTVNNFGGQGN............................. 284
6 -50.1004h40_A mol:protein length:327 putative cell adhesion protein  ali model follow..  9  1.......................................GAAGSPEEDMEDRVRIDPVAG-GYYPSISPSAQTRGATPDGELEDGSTIRLVVYDDAKNLLEEYSKAYLVRNAGTSGSSLLYPCEVDDNGAVISSSSTPLYMKAGTYYFRILSPAKALNSKGFVNIGNDRYTQTAMTAVTITKIDEG-----GTLNNVQTLYLPPIINQTARMQFTVRAGEGVHT---LEMLAEGIEISGIQQPLDNTTSFDWVNGDVLPVKVGDSASVRITQATRNADNSLVAHTGVLPTDARSHS-ISVLLNLKVNGNPTQYQMLL-------TGLYLTAGHSYNYTATVKISNLTWQNRSWTENVVMDK............................ 327
7 -46.4004dgu_A mol:protein length:247 putative cell adhesion protein  ali model follow..  13  2................................................DELQETSKEATNFSISIDDAL-SDPLTRTSNDLFPARNSITTGEVISMAASGQD---------------------YTPFIVGKDSRAWNEIGTATGTVTFYAHYPALTDEAATR----SGGNKRYLKGGQEHLFGTAE-------AAPGSQNVSLKFKRMTVPVIILDENDRPYEG--------EAKVELSLKNEGTQDLLNGTIEINENALSENIEV----------KKVSEGVTTNVLPQKINAG---EEIGTITVGGVTQKISAV--------EDLDLKAGSTLSVRLSKKFGGGIIDVPLYR................................... 247
8 -29.6004eps_A mol:protein length:510 hypothetical protein  ali model follow..  9  1..........................................GEEEVPGNVRNGIVLNVTDTGIISNEPSTRTEDTGFVTTFTQGDQIGLFAVKDGA------------------ILDEINNMPFTFNGSSWSGKPILYDDRLVGVNFYAYYPYQSEMTGKTDELTTEQSDQKAYAKQDLMTSNATALIGE----NGNYSLSFQLTHRMSLVVVKLPSTRYIFTDA---------------EGVAMPEETPYVAMSVDVAFYLDNVEEGTKISPYYDAKKDEYRLLRKPSSENQ-------IIGHYNDKQCTLDTAEKM----------KEGKYKRFVVDGGYKEVTHHLQ...................................... 269
9 -29.4005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  1......................MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLLVNARAAHTNGEESINMDAEDF---EDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLK----------------PGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQVFRDLMSRMYSNQTVTIGGTKPDGENNVKLQRVVAKLDVNIVEGV---------ENLQKIELCNANVHYRLPVELRRVGATNQWLGYMPEAIVESTKWWGNTGNAENKPINFFRLTTRGGLVYDVPIITHEGAIPGGQYLPAKGLLADKPSYTVYRNRHYIYRIKTLPDKVKYSICDWNIVTND.............................. 346
10 -25.4004gpv_A mol:protein length:348 putative cell adhesion protein  ali model follow..  9  1........................................GNDEVENLGNNVPGEQAVLTIKLKGDGDNQAQSRAAGPATDTEDAV---------------------NNYLVFLFREGGALDCAPYEGSSNAAATITTGTTAAKKAYVVANTGALTDLLAVTGSLMDNTDNASTQTKTNLWMSGESEVKFNGG---TNAQVTVSLSFVAAKIQLIVKDNRKNMTGGTITITDDAAVLLFAGKKGRFGFNQYTGAFDSGVTTSTALSDAVSPGDFTINAGSTVFNHFYTFGNDGTTQPTILAIKSTKTVGGTSSPIFYPIFTNTDARHTIEPGKSYTVTVTLNGDVVTVTAAQWVTQPVDKEFN.......................... 348
11 -19.0004jg5_A mol:protein length:355 Putative cell adhesion protein  ali model follow..  12  1........................................GKDEDPVL----PLEGAKLSVAVKASGTATKAYNPNDVNEL-EGEAYINNLAVVVFNETGTELLGYKWEALSGAEHSAIIADVPTTKAV-------------RARIIVLANVPRDLSTVSTYDEFQTRLVDLSSQSQTNLTMSSQVGYTDLGDQNVDGISDPILLTRVAARIDLVNISTRAGTPFAGREVRIDAVGIYNMKTKSYYSEADWGETEAPDAVRNSEDTSFEDLLVNDGTSISNTPFVHYVMENMKSDDHTMIAVKATLRGNSFTAVINAGGLQNGYDHNFIRRNYVYRLRIYFDGESIAVQVVGWGPVMQHPVID.......................... 355
12 -17.6003up6_A mol:protein length:347 hypothetical protein BACOVA_04078  ali model follow..  6  1........................................................GDVAYELPAHTTRAQLSIDLVNNGDVEQQEKINSMRFIVFGSTPGGVRLDVNEHILLSTPETATDIDAQLLE------------TSSNDILVVVIANEPQSLTSQLDGIANLNSDGQIISATGMMTGVIRDISIAPD---ETKTVQMVIERAVARVDVFIEAIDGGAVTG-YTAGSTSVTLHNFSHDSYFKEDVSESNLLTHSWTAATTETWAYSSAPGAENRKLLCSFYTAERLFKSDYSDRLSISMDVTGITGKVIESVTKVDGTGSPTEIRRNNVYQVTARVGKIGLTISVEDWGERQD............................... 340
13 -17.1005cag_A mol:protein length:318 Uncharacterized protein  ali model follow..  8  2.....................................MLTGCSRRDILDDYPVSG---VDIKLDWDGVTDQLPEGVR-------------VIFYPKNGDGRKVDKYLSVRGGEMKVPPGRYSV-------------VVYNYNTESIRIRGEESYETEAYTGNCNGLGIEGTEKMVWSPDSLYVLNIDELKIEK-SEEVLRLDWKLESVVKKYSFAVEAKG------LEYVATVVGSIDGL--SDCYCIGKGRGVCSSQPIYFEVKKGDNKVTAFVKEMTMPTRMSTSERETSSEKGAIILILKFIKDNTVQEATIDVTEIIGTLENAGTGEDGKPTPPPEIGGGGMGGNVDGWGPEDNVE............................. 314
14 -16.6004qdg_A mol:protein length:310 Putative adhesin  ali model follow..  8  1.......................................GERIYEDLAP----PHGVSLRFIYDYNMEYANAFAKKVDCLTLLVYDENGNYVDTRIVTGTELQDENYRMKLDL----------------------------KQGNYHFVAY----GGLACNKSSFLMKYTPGEGTGYTDLQVELDSECLTNPATADLYSEGTVEMMKNTNNIRVVLQQMNGEP----VDDKKFEFEITDDNILFSYD---NNLLENGMVTPWAQGQASAGFTDEGREVVVAYAELSTSRLMVRDWYSPKLTVRRKADGVNYLLMLKSDLYASMDSQEFLDRESEWSMIFFLSPNLTYIKINDWTVRINDIR............................ 309
15 -16.1003gf8_A mol:protein length:296 putative polysaccharide binding proteins (DUF1812)  ali model follow..  8  2.......................................ASCDNEDLPE------RLSVKFKYDYNMEFADAFHAQVDKVE---------LYVFDKNGK---------FKQAEEGSALSTGNYLMEVELPVGQYQFMAWAGARDSYDITSLTPGVSTLTDLKLKLKREASLIINKRMETLWYGEVINVNFDGT---VHQTETINLIRDTKIVRFGFQSYTGSWTLDMNDYD---YEIIESNGHLGHD------------NSLLDDDVLSFRPYYMEQKDPATAYVDMNTMRLMEDRKTRLVLTEKASGKRVYLAMTNAEGKNLSTQEYLDRQSNYHIIFFLSESAVQIVVNGWVHRIQEEN............................ 295
16 -15.7003liu_A mol:protein length:402 Putative cell adhesion protein  ali model follow..  8  1........................................GDDNEIEIPKAPVLEKAQLALAIKSEEGAVTKTGETTPTDADVNTLTVGVF-------------VDGWSVIYTKDATPNSDGTKDVGPQEVYAGEAHVVVVANAAPVIQT---ELAKAKDITDFIETTINLSDETLTKGLTMSSKVLTVKDISGKEVYGAGPVPLVRDVASIALAGADIGNPENANYESFVLKEVFIASAKGVSSV-LTSPNNIDEGSYKKGLQTKYDALAKKHVENDPALNHEFYVYENTKGEVKSGESNVNEAYANHTYAIPVGEEVTIDGTEKRSVQRNYKYEISLTIIGPGASVKVEPWNVKTIHEE............................ 400
17 -14.5004q98_A mol:protein length:369 Major fimbrial subunit protein  ali model follow..  9  2............................................KDNEAEPVVETNATVSFII-----KSGESRAVGDDLTDAKITKLTAMVYAGQVQEGIKTVEEDGGVLKVEGIP-----------------------KSGANRVLVVVANHNYELTGKS-ALTTSLTAENQNAKNLIMTGKSAAPGGTASDNLVSAGTPLAVTRVHAGISFAGVEVNMATQYQ-FKPADAKIAALVAKKDSKINAYLYGVQTPAGLYTPDAAGETYELEASLNTNYAVGAGFYVLESKYDASNELRPTILCCDGDGTTYYPVLVNYDAITQGQNKIVRNNHYKISLNITGPGVTCQVTPWVVVNQA.............................. 366
18 -14.4004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  9  1.......................................GACSNDEEMATGGQNDGREAYMSVSVAMPKSTGTRALGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILNVGGANKAGYDGKAKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGDNAATAISEAQADRSMIYVDRVVAKVSLGTNPDGLKVPAGVT-CTFGDWALNITNKSMFP-RIDPNYELAGFDVSQFNYLKVADDGTLPADFSAMADSKYCLENTMAADAQTQAQTTSAVASAVYT-SKPDAAAGETVGVEYFQKGVCYWYTLTINSLSVEITVNPWTTWSQGVD............................ 507
19 -13.3003pay_A mol:protein length:314 putative adhesin  ali model follow..  7  1.......................................GSCDREDLPR------ELWLEFVFDYNMEYADAFNPQVKSVDVLVFDSDDKLLFTKSVKVAALVGGNRMSLTDEL---------------------------DFGSYKVLTVGSLSDRFRLSDNAVSLKRETGGVNFEFQHLYFGEVVEVDHLPSNTNHKIYPVNLIRDTNRFNLALMGEENKVDGTQYTFEIQAPENAVYSWENEP------------TGQGPITYVPYYTGPGEISDVVMSARLNTMRLLNRSGWDYKFIIRDANTEAEWSYNLMTLLSIARPFQEYLDRQSEWNLVFTVVEKNIGIVVGTWIHWLHGME............................ 313
20 -11.4004rdb_A mol:protein length:305 Immunoreactive 32 kDa antigen PG49  ali model follow..  7  1....................................................GDRSIEISIRVDDFTKTGEAVRYERNQGSAAERLITNLYLLLFDQSGANPAKYYITGNTFTGGTWLPDDMKVKLDMTQSEAGERKVYVVANVDNAVKTALDAVANESDLQTVKRTTAMPWSTDIASPFLMSGNK----THDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIISLSEFKFRYVNFDKETYVVKPTTKPDNLISSANGVWPQITDWTVWTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLDKILRNHWYKYEVEI................................................ 305
21 -10.1005dhm_C mol:protein length:282 Immunoreactive 32 kDa antigen  ali model follow..  8  57.............................................................................................................................................EAGERKVYVVANVDNAVKTALDAVANTAMPWSTDIASPFLMSGNK----THDFLANRLLDNVPLVRAIAKVELNISLSEKFQIVPIISLSEFKFRYVNFDKETYVVWPQITDWTVWGASLNTSPAPDAGTGYTLDANGKVTALRIVTYLNERDSKGATVEVALPRVDDGTLPPPEFGPELYRLPLDKILRNHWYKYEVEI................................................ 282
22 -9.7605nfi_B mol:protein length:281 Minor fimbrium anchoring subunit Mfa2  ali model follow..  8  1.........................................CPRG-----------VYVNFYSQTECAENPSYPAEVARLNVYAFDKDGILRSANVFEDVQLSAAKEWLIPLE----------------KDGLYTIFAWGNIDDHYNIGEIKIGETTKQQVLMRLKQDGKWATNIDGTTLWYATSPVVELKNMEDGADIHTRANLREYTNRVTVSVDSLPHPENYEI-----------------KLASSNGSYRFDGTVAKADSTYYPGETKVVGDSTCRAFFTTL----KLESGHENTLSVTHKPTGREIF--VGAILSSQYAQNINLRCINDFDIRLVAH-VVVQIWINGWL................................... 277
23 -9.2405cyb_A mol:protein length:152 Lipoprotein  ali model follow..  8  2.....................KLKRFTLSLASLASFSLLVACSQRAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQ........................................................................................................................................................................................................................................................................................................................ 57
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.