current user: public
If you have questions about the server, please let us know.

Query: PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .
# Score Template Links and tools%idFirst MTDSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLQSRQQSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIGYPAKDVAAFMGLVRLPFTCQRLWKIYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHPFFCQTDENDYQYLPLast
1 -7.1004rhh_A mol:protein length:705 Beta-xylosidase  ali model follow..  8  250RGGCVTAGMDASYFYTRFFHNIEEVGLYALEQAEVLKEQAFRSNELIEKEWDDQKFMMAHAIRSYYGNTEGKPIWVVNGGEYRMMNTFDLTV----------------------DQLFFELKMNPWTVKNVLDF-----YVERYSYEDRVRFPG-----ETEYPGGISFTHDMGV---MTHEQLVNWV------LCAAVYIEQTKDWAWRDRRLTILEQCLESMVR................................ 465
2 -6.5704o3x_B mol:protein length:255 Transferrin binding protein B  ali model follow..  8  164..........................................................................................................................FATKKMTGKLSDKEKTIYIRGNRFTGAATASDKNKGKGESYNFFSADSQSLGGFYGPKAEEMAGKFVANDKSLF------VFSAKHNGSNV............................................. 255
3 -6.5603isr_A mol:protein length:293 Transglutaminase-like enzymes, putative cysteine protease  ali model follow..  9  14........FKIHSDITYQVMSPTTFIFNVHALRTESQHILDESLIVTPPIEIEEFSYNSGTSRFVRLKATENTTFSMSYTATVDTQYKVIDQRQELETVPVVDLDGDIIPFLFPSRYCKLQKLAYKEFGKIENVYSKVLAINNVEYISGSTQTSAFDTITERAGVCRDFAH-IALCLSIPARYFTGYAFKLNPEAYIGGNWIIFDATRLV................................................ 235
4 -6.2905a0g_A mol:protein length:188 SURFACE ANCHORED PROTEIN  ali model follow..  11  33...........................................................................................................IYIEDMDNNDTSSVVY----FNVTKATPTFKGSVVKVLYNEQFGSSKLFTEKAIK-VKGDELKNSVLRVIGYPSNEKYQLTEGQFRKLTQRAVWNFTDSNLSLDKLSQKEIDALNELINAKNAIPDNLVL-------NLYLPDDSYYQNLP 188
5 -6.2804c1o_A mol:protein length:727 BETA-XYLOSIDASE  ali model follow..  8  266RSGYATAGLDTSYFYTRFFKNIEEVGKYALDHIEALKERAFQSNQLIER--DWLSDDQKFMMAHAIRSYYGNTQLLEQEGKP--------WVVNEGEYRMMNTFDLTV------DQLFFELKMNPWTVKNVLDL-----YVERYSYYDRVRFPG-----EKEYPGGISFTHDMGVA--MTHEQLVNWV------LCAAVYIEQTKDWAWRQEKLPILEQCLESMVNR............................... 482
6 -6.2303g14_A mol:protein length:193 Nitroreductase family protein  ali model follow..  8  8........................IKKRKSIKKFEQTAIDRDKLLKIID---------MAMRAPSWKNKTPYKFIVVESDKLKLDIANAIENKTSAASEAVLNSPMTIVAVANPEESGDVSGKEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKIPDNLRVVALTPLGVPKDSAEDEPHHPKKDMDEYLYIDKWGTSFMESN.............................................. 186
7 -6.0002xab_A mol:protein length:249 HEAT SHOCK PROTEIN HSP 90-ALPHA,  ali model follow..  6  31.................................AEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFG---------------------------VGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLYLEERRIKEIVKKHSQ............... 219
8 -5.9901yc1_A mol:protein length:264 Heat shock protein HSP 90-alpha  ali model follow..  6  46.................................AEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFG---------------------------VGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDTGEPMGRGTKVILHLYLEERRIKEIVKKHSQ............... 234
9 -5.9501zch_A mol:protein length:255 Hypothetical oxidoreductase ycnD  ali model follow..  11  1.....................MNEVIKSLTDHRSIRSYTDEPV------AQEQLDQIIAVQSAPSSINGQQVTVITVQDKERKK-----KISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDAVDAGIALGTATAAAESLGLGT-----GAVRGNPQELIELLELPKYVGLVIGHPADRSA---KKPRLPQEAVNHQETYLNQDELTSHIQAYDEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREML. 240
10 -5.9005hpf_A mol:protein length:178 p-hydroxybenzoate hydroxylase transcriptional activator  ali model follow..  12  6.........................................................LPKVAQSFLNLLLTFSIVVLDEHEVVPVARSYLPQQDNRVSPYGMHLGNRLPAHATSTGKVLLSVLDREVQIEWIEKYGLKRLTPYT-ITDEHTFLETLDAVRQSDYCLSTEEHELGV-IAVPVLNAQGLT----AALNCMSQTNRVQPQYLIDQVLPLLRNTANELRNLV.............................. 178
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205