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Query: PB007843 JCVI_PEP_1096682172521 /source_dna_id=JCVI_ORF_1096682172520 /offset=0 /translation_table=11 /length=152 /full_length=152, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst LEKIISISGRPGLFEVHTQTRTGVVATSLVDGKRINANARNQVSLLSEINIYGLEKEVPLQEVLTMIHTKEEGKQCSVKPKSPADELEAYFFDVFQDYDEERVYPSDIKKIIQWYNILAEKVPQVFKAETAEEESQEEVAVKEETSSDLast
1 -70.2002l5q_A mol:protein length:142 Uncharacterized protein  ali model follow..  40  2LKTILSIAGKPGLYKLISQGKNMLIVETVDAAKRVPAYAHDKVISLADIAMYTDAEEVPLSEVLEAVKKKENGAVASINKKASADELHAYFAEVLPNYDRDRVHNGDIKKLISWYNILVNNGITEFVEAPALE............... 136
2 -7.3703u7r_A mol:protein length:190 NADPH-dependent FMN reductase  ali model follow..  13  2VKTVAVMVG-----SLRKDSLNHKLMKVL--QKLAEGRLEFHLLHIGDLPHYNDDLWADAPESVLRLKDRIEHSDAVL---------------ITPEYNRS--YPGMIKNAIDWAT................................ 94
3 -7.0403fvw_A mol:protein length:192 Putative NAD(P)H-dependent FMN reductase  ali model follow..  12  4..RILFIVG-----SFSEGSFNRQLAKKAE--TIIGDRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIW---------------FSPVYNYA--IPGPVKNLLDWLS................................ 94
4 -6.5201w8x_N mol:protein length:126 PROTEIN P31  ali model follow..  28  78.QRIKCPAGKQGYFPLLVPGRAKFVARHLGSGKKSV................................................................................................................ 112
5 -6.1704ltd_A mol:protein length:197 NADH-dependent FMN reductase  ali model follow..  12  4..SIVAISGSPS-----RNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLI---------------ATPIYKAS--YTGLLKAFLDILP................................ 96
6 -6.1203esl_A mol:protein length:202 Checkpoint serine/threonine-protein kinase BUB1  ali model follow..  10  9......................................NQTKIAYEQRLLNDLEDMDDPL-DLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYI.............................. 87
7 -6.0203cxb_B mol:protein length:112 Pleckstrin homology domain-containing family M member 2  ali model follow..  14  1...................TKEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYDRTDVIPLLSV------NMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSKGVIPQGVAPS.............. 112
8 -5.9004a1g_A mol:protein length:152 MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1  ali model follow..  16  14...............................................EAHMQSYKGNDPLGEWERYIQWVEE------NFPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFA.............................. 78
9 -5.8902lud_A mol:protein length:224 Glycosylphosphatidylinositol-anchored merozoite surface protein  ali model follow..  20  19LSEIIKSDGPFTILQLVGYLRTDLLLK--VDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAK....................................... 128
10 -5.8702jo7_A mol:protein length:224 Glycosylphosphatidylinositol-anchored merozoite surface protein  ali model follow..  20  19LSEIIKSDGPFTILQLVGYLRTDLLLK--VDSTKVDEAGKKVKAYLEKIGIRGDSVEAALDNLMIKVYEITKGTVESSAQGTDSEELKTLLLKFSEDLKAEQELHSEAK....................................... 128
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;