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Query: PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNILNNKNKRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLTLast
1 -60.5002l3b_A mol:protein length:130 Conserved protein found in conjugate transposon  ali model follow..  51  1...............................MNDDVDIQQSYPFSIETMPVPKKLKVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMSDGTVLLPNDLYPLPGETFRLYYTSASTDQQTVDVYFQDSFGQLQQLTFSFNNDSSKEEEL............. 123
2 -59.7004lba_A mol:protein length:137 conjugative transposon lipoprotein  ali model follow..  88  1..............................GCDDDMDIQQSYPFTVEVMPVPNKVVKGQTVEIRCELKKEGDFSGTLYTIRYFQFEGEGSLKMDNGITFLPNDRYLLENEKFRLYYTAAGDEAHNFIVVVEDNFSNSYELEFDFNNRNVK-DDDLTIVPIGNFSPLL 136
3 -54.1002l7q_A mol:protein length:124 Conserved protein found in conjugate transposon  ali model follow..  52  2.................................NELDIQQEYPFTVESMPVADEIAGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKMEDGTVLKPNDRYLLNEWKFRLYYTSQSDKAQTIDLYFEDNWGNLQQLTYDFNGKLE.................. 118
4 -15.1005iuc_A mol:protein length:127 Platelet binding protein GspB  ali model follow..  14  10.............................................VVNVPSEITVYRGESFEYFATVTDNSNAFDLAKTVVRWLYSNQPGRGTEWLQYSVTQVGNQLKVRIFGNVPIDTTIGDYTRYVVATDAAGNVNATQTEMGNAAVDKT............... 116
5 -12.1004m03_A mol:protein length:210 Serine-rich adhesin for platelets  ali model follow..  10  92...........................VTVVSTDQANNKSTTTFTINVVDTTAPTVTPIG-------DQSSEVYSPISPIKIATQDNSGNAVTNTVTGLPSG--LTFDSTNNTISGTPTNIGTSTISIVSTDASGNKTTTTFKYEVTR................... 203
6 -11.7004jgu_A mol:protein length:95 ColH protein  ali model follow..  10  23...........................................................ALNQKVVFYGKGTYDPDGSIAGYQWDFGDGSDFSSEQNP----------------SHVYTKKGEYTVTLRVMDSSGQMSEKTMKIKITD................... 95
7 -11.5002kl6_A mol:protein length:114 Uncharacterized protein  ali model follow..  18  12..................................................GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI---NGTLYKNWTVSLGPKEEKVLT-----FSWTPTQEGMYRINATV-DEENTVVELNENNNVATFDVSVVLE........... 108
8 -11.4003pdg_A mol:protein length:98 Fibronectin(III)-like module  ali model follow..  9  2...........................................VTIDSPVAGERFEAGKDINISATVKSKTPVSKVEF--------------YNGDTLISSDTTAP-----YTAKITGAAVGAYNLKAVAVLSDGRRESPVTPVLVKVIVLE............... 92
9 -11.3002y72_A mol:protein length:85 COLLAGENASE  ali model follow..  15  14...........................................................AVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA-----------------TSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKN................... 85
10 -11.2003pdd_A mol:protein length:190 Glycoside hydrolase, family 9  ali model follow..  10  2...........................................VTIDSPVAGERFEAGKDINISATVKSKTPVSKVEF--------------YNGDTLISSD-----TTAPYTAKITGAAVGAYNLKAVAVLSDGRRIESPVTPVLVKVIVKPTVKLTAPKSNVVAY 106
11 -11.2005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  7  1............MKPMSDYDIPTTENLYFQGAMRGVDPQPDLLVNARAAHTNGEESINMDAE-----DFEDRVHSLAM-LVFDSNTGEKVAEHFSSSIGSGTSTYVFT--------VKLKPGQRDF-FFVANIPNMQTAMASIVNKSDMN................. 130
12 -11.2002eec_A mol:protein length:125 Filamin-B  ali model follow..  11  4.......................................GSSGFKVRVGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFIN-TTRAGPGTLSVTIEGPSKVKMDCQETPEGYKVMYTPMAPGNYLISVKYGGPNHIVGS-PFKAKVTGQRLVSPGSANETSS..... 124
13 -11.1004u7k_A mol:protein length:87 ColH protein  ali model follow..  13  16...........................................................TEKEKIKFSSEGSFDPDGKIVSYEWDFGDGN-----------------KSNEENPEHSYDKVGTYTVKLKVTDDKGESSVSTTTAEIKD................... 87
14 -11.1004aqo_A mol:protein length:92 COLLAGENASE  ali model follow..  15  21...........................................................AVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA-----------------TSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKN................... 92
15 -11.0004jrw_A mol:protein length:87 Collagenase  ali model follow..  15  15...........................................................AVGRNIEFSGKDSKDEDGKIVSYDWDFGDGA-----------------TSRGKNSVHAYKKAGTYNVTLKVTDDKGATATESFTIEIKN................... 86
16 -10.9003idu_A mol:protein length:127 Uncharacterized protein  ali model follow..  18  25..................................................GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYI---NGTLYKNWTVSLGPKEEKVLT-----FNWTPTQEGMYRINATV-DEENTVVELNENNNVATFDVSVV............. 119
17 -10.6002yrl_A mol:protein length:102 KIAA1837 protein  ali model follow..  9  23...............................................................STTLDGSKSSDDKIISYLWEKTQGPDGVQLENAN-------------SSVATVTGLQVGTYVFTLTVKDERNLQSQSSVNVIVKEES................. 97
18 -10.6004m00_A mol:protein length:541 Serine-rich adhesin for platelets  ali model follow..  10  423...........................VTVVSTDQANNKSTTTFTINVVDT-------TAPTVTPIGDQSSEVYSPISPIKIATQDNSGNAVTNTVTGLPSG--LTFDSTNNTISGTPTNIGTSTISIVSTDASGNKTTTTFKYEVTRN.................. 535
19 -10.4002z4t_A mol:protein length:514 Beta-galactoside alpha-2,6-sialyltransferase  ali model follow..  11  4....................FLLLTLILLTACNNSEENTQS------IIKNDINKTIIDEEYVNLEPINQSNISFTKH--SWVQTCGT-QQLLTEQNKESISLSVVAPRLDDDEKYC--------FDFNGVSNKGEKYITKVTLNVVAPSLEVYVDHASLPT..... 128
20 -10.3002kut_A mol:protein length:122 Uncharacterized protein  ali model follow..  8  1...........................................MDLPITLSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWKATRKANPGVPVYAVV-DPDNRVAESDKANNVFSRIVKVL............. 115
21 -10.3003lso_A mol:protein length:489 Putative membrane anchored protein  ali model follow..  10  193............................................DGLTITAPESASIKQDVQITATVPEKLN------------EKMDGKVQFFVNHIAAGDPVPVTEDNKASTSIIFDTSGSKTITARFIDAEGYNPAPDGETIIPVVTELDTKKPEDTDS..... 298
22 -10.1002y1b_A mol:protein length:128 PUTATIVE OUTER MEMBRANE PROTEIN, SIGNAL  ali model follow..  8  1...................MGSMLSRSPVEPVQ-------STAPQPKAEPAKPKAPRATPVRI---YTNAEELVGKPFRD--------GEVSGDSCQASNQDSPPSIPTARKRMQINASKMKANAVLLHSCEVTSGTPGCYRQAVCIGSALNIT............. 118
23 -9.8404xed_A mol:protein length:99 Peptidase M14, carboxypeptidase A  ali model follow..  13  3.......................................ANDPPNIPNVTGPTNGNIGTTYNYTFV-TTDPNGDNITYYIEW----GDGFTEEWIGPY---------SGEEVIFSHTWDKKGTYVVRAKAKDILNYESSGTLEVTMPK................... 99
24 -9.7302c26_A mol:protein length:260 ENDOGLUCANASE  ali model follow..  14  11............................................KAIFTFSPEDPVTDENVVFNASNSIDEDGTIAYYVWDF----GDGYEGTSTTPTI---------------TYKYKNPGTYKVKLIVTDNQGASSSFTATIKVTSAT................. 97
25 -9.6705cyb_A mol:protein length:152 Lipoprotein  ali model follow..  6  2...........KLKRFTLSLASLASFSLLVACSQRAQQVQQ-----PVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGDRIT--VVTGTTGTWTELESDGDQKVKQVTLDSANQRMIIGDDVKIYTVNGNQIVVDDMDRDPSDQIVLT 151
26 -9.5605axg_A mol:protein length:618 Dextranase  ali model follow..  7  1........MGKKIIALILIISTAIFGALYMYRNNNIVALTKGKLISDVYTDKARYYPSDKVTVKIELNNELQ-EDFRGTIYIFYKHLESIVGKAKIQNIKSGQKKQLN---IFWEAPKDDFKGYLVEVYAVKGNKAIDNKNTAVDVSSD.................. 145
27 -9.4205n1t_M mol:protein length:160 CopC  ali model follow..  7  1MYATKPGLARLAPAVLAAAVFVATPAHLRAADPPEAIVDAAGLFSEPVVDRFSTFRAFRLSLPENGIRNLTQLNTLASELGVDTEESAHHEVELESDLSSQSAEVTLH--------EPLPAGAYAVVWRVLSVDGHTTTGFHAFVHAGGTAS............... 158
28 -9.3402d7o_A mol:protein length:111 Filamin-C  ali model follow..  12  3..........................................SGSSGAINSRHVSAYGP------GLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSKAEITCKDNKDGTCTVSYLPTAPGDYSIIVRFDDK-----------HIPGSPFTAKITGDDSMRSGPSS 110
29 -9.3105vi0_A mol:protein length:369 alkylpurine DNA glycosylase AlkC  ali model follow..  15  230....TAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHH-------LMVTPAVINLGERINLSFTLESTAPAPQVDYAIDYVKSTGHKAFSLGAGAQQHIRREQHIRDMTTRKHY----PGRHVVHVLV---NGERLG-SAEFELR.................... 368
30 -9.2902d7p_A mol:protein length:112 Filamin-C  ali model follow..  5  3..........................................SGSSGSDDARRLTVTSL------QETGLKVNQPASFAVQLNGARGVIDARVHTSGAVEECYVSELDSDKHTIRFIPHENGVHSIDVKFNGA-----------HIPGSPFKIRVGEQSQAGSGPSS 111
31 -9.2401wgo_A mol:protein length:123 VPS10 domain-containing receptor SorCS2  ali model follow..  18  32............................................QVSIQGEAVAVRPGEDVLFVVR-QEQGDVLTTKYQVDL----GDGFKAMYVNLTLTGE----------PIRHRYESPGIYRVSVRAENTAG-HDEAVLFVQVSG................... 119
32 -9.2003m86_A mol:protein length:111 Amoebiasin-2  ali model follow..  8  6..........................................IHILTEKEDHATLHISFNDLIKIQLRTN---PSTGYAWNIEYPTDTFSLSQDTIKAEPHPSGMVGFPSIREIQLKPLKVGTTTIKLGYEKGKEPLRSLTYSVVIR.................... 111
33 -9.1704m02_A mol:protein length:204 Serine-rich adhesin for platelets  ali model follow..  11  113..............................................TVTVGNQTIEVGKTMNPIVLTTTDNGTGTVTNTV----------------TGLPSG--LSYDSATNSIIGTPTKIGQSTVTVVSTDQANNKSTTTFTINVVDTT................. 198
34 -9.1102di8_A mol:protein length:111 Filamin-B  ali model follow..  10  3..........................................SGSSGIGDARRAKVYGR------GLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVDIQTEDLEDGTCKVSYFPTVPGVYIVSTKFADE-----------HVPGSPFTVKISGEGRVKSGPSS 110
35 -9.1102ee6_A mol:protein length:105 Filamin-B  ali model follow..  11  3..........................................SGSSGEGGAHKVRAGGP------GLERGEAGVPAEFSIWTREAGAGGLSIAVEGPSKAEITFDDHKNGSCGVSYIAQEPGNYEVSIKFNDEH................................. 88
36 -9.0502dmb_A mol:protein length:124 Filamin-B  ali model follow..  13  3..........................................SGSSGTGDASKCLATGPGIASTVKTGEEVGFV--------AKTAGKGKVTCTPDGTEAEADVIENEDGTYDIFYTAAKPGTYVIYVRFGGVD................................. 91
37 -9.0402d7q_A mol:protein length:111 Filamin-C  ali model follow..  9  3..........................................SGSSGAGDPGLVSAYGP------GLEGGTTGVSSEFIVN-TLNAGSGALSVTIDGPSKVQLDCRECPEGHVVTYTPMAPGNYLIAIKYGGPQHIVGS----FKAKVTGPRLSGSGPSSG...... 111
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.