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Query: PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSLLLIEYNSITKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYRMVILNEDTFEERVSLKLTRLNVFILVTLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYESIKKVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVALEDKYNVFLast
1 -7.5302xzb_B mol:protein length:290 POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA  ali model follow..  11  1................................MAALQEKKSCSQRMEEFQRYCWNPDTMLGRTLSRWVWISLYYVAFYVVMSGIFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRPDVYGEKGLDITTWAGLAHTLHRFLA................................................ 118
2 -5.9706mho_B mol:protein length:826 Transient receptor potential cation channel subfamily V member 3  ali model follow..  9  588VLKFLFV-YIVFLLGF-GVALASLIEKCPKDNKDCSSYGSFSDAVLELFKLTIGLGDLNIQQNSKYPILFLFLLITYVILTFVLLLNMLIALMGETVENVSKESERIWRLQRARTILEFEKMLPEWLRSRFRMGELCKVAEDDFRLCLRINEVKWTEWKTHVSFLNEDPGPVRRTDFNKIQDSSR.... 770
3 -5.9305a1u_H mol:protein length:511 COATOMER SUBUNIT DELTA  ali model follow..  12  3LLAAAVCTKAIVSRQFVEMTRTEGLLAAFPKLMNTGKQHTFVETESVRYVYQ-----PMEKLYMVLITTKNSNILEDLETLRLFS----------IPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQ............... 168
4 -5.7306c8f_A mol:protein length:675 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  11  485VYLLFMIGYALNPCTSQESCIETSSQCTVPEYPSCRDSSTFSKFLLDLFKLTIGMGDLEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQWATTILDIERSFPVCMRKAFRSGEMVTVGKNLDGTPDRRWCFRVDEVNWSHWNQNLGIINEDPGRSNSLEV....... 672
5 -5.5501ay2_A mol:protein length:158 TYPE 4 PILIN  ali model follow..  16  1..........................................................................XTLIELMIVIAIVGILAAVA-----LPAYQDYTARAQVSEAILLAEGQKSAVTE............................................................. 49
6 -5.5102i5r_A mol:protein length:122 Toprim domain-containing protein  ali model follow..  13  9..KVIIVEGRSDKQKVAAVLNEPVVIVCTNGTISDARLEELADELEGYDVYLLADADEAGEKLRRQFRR........................................................................................................................ 75
7 -5.4405j11_A mol:protein length:147 Thymic stromal lymphopoietin  ali model follow..  12  8LVPRGSHMYDFTNCDFEKIKYLSTISKDLITYMSGTKSTEFNNTVSCSNRLTEIQSLTFNPTAGCASLAKEMFA---------------MKTKAALAIWCPGYSETQINATQAMKKVTTNKCLEQVSQLQGLWRRFNRPLLKQ.............................................. 140
8 -5.4002hi2_A mol:protein length:158 Fimbrial protein  ali model follow..  16  1..........................................................................FTLIELMIVIAIVGILAAVA-----LPAYQDYTARAQVSEAILLAEGQKSAVTE............................................................. 49
9 -5.4004beh_A mol:protein length:114 60S ACIDIC RIBOSOMAL PROTEIN P1  ali model follow..  6  24.......................................................................................................TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDFGLF 113
10 -5.3006bbj_A mol:protein length:868 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  11  616VYLLFMIGYALNPCTSQESCIETSSNCTVPEYPSCRDSSTFSKFLLDLFKLTIGMGDLEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQWATTILDIERSFPVCMRKAFRSGEMVTVGKNLDGTPDRRWCFRVDEVNWSHWNQNLGIINEDPGRNDGYQYYGF.... 806
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 5 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.