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Query: PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEGHEEVRTGWSRWDSLWPFLLFYCNFLKGVFLLRIAVVDGQGGGIGKHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPINRSGVEVIGVTPEPLPHLIEALVNRVKFFYQEGGDKDLast
1 -9.7002e85_A mol:protein length:159 Hydrogenase 3 maturation protease  ali model follow..  13  1..............................ASAVTDVLLC-GDDGAGPLLAEKCAAAPKGNWVVIDGGSAPENDIVAIR-----ELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMNYLIDQLKEDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFA. 152
2 -9.0605mlv_I mol:protein length:448 Tubulin beta chain  ali model follow..  13  118....DVVRREAEACDALQGFQLTH------------SLGGGTGSGMGTLLLSKIREEYPDRMDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQ..... 292
3 -9.0405ubq_C mol:protein length:441 Tubulin alpha chain  ali model follow..  13  120....DRIRKLADNCTGLQGFLVFN------------SVGGGTGSGLGSLLLERLSVDYGKKSTAVVEPYNSILSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLRFDGALNVLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNS..... 294
4 -9.0103j8x_A mol:protein length:451 Tubulin alpha-1B chain  ali model follow..  13  120....DRIRKLADQCTGLQGFLVFH------------SFGGGTGSGFTSLLMERLSVDYGKKSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA..... 294
5 -8.9901z2b_A mol:protein length:448 Tubulin alpha chain  ali model follow..  13  120....DRIRKLADQCTGLQGFLVFH------------SFGGGTGSGFTSLLMERLSVDYGKKSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNA..... 294
6 -8.9805flz_C mol:protein length:473 TUBULIN GAMMA CHAIN  ali model follow..  12  121....NKIDKEIDSTDNFEGFQLLH------------SVAGGTGSGLGSNLLEALCDRYPKKIEVVVQSYNTILALRRLIEDSDATVVFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSLIPSPELHFLSPSFTPFTSDYIHDDIAHKCHSSYD...... 293
7 -8.9706e88_A mol:protein length:434 Tubulin alpha-2 chain  ali model follow..  13  118....DRIRRLADNCSGLQGFFVFH------------SFGGGTGSGFTSLLMERLSVDYGKKSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRIISQVVSSITASLRFDGALNVLVPYPRIHFPLAAYTPLISAEKAYHEALSVSDITNS..... 292
8 -8.9705mlv_E mol:protein length:455 Tubulin alpha-1 chain  ali model follow..  14  124....ERIRRMADNCSGLQGFLVFH------------SFGGGTGSGLGALLLERLNMEYGKKSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQ..... 298
9 -8.9005w3j_B mol:protein length:457 Tubulin beta chain  ali model follow..  14  118....DVIRREAEGCDSLQGFQITH------------SLGGGTGSGMGTLLISKIREEFPDRMDTVVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNHLVSSVMSGVTTSLRYPGQLNSLVPFPRLHFFMVGFAPLTAIGSQSFRSLTVPELTQQ..... 292
10 -8.8803cb2_A mol:protein length:475 tubulin gamma-1 chain  ali model follow..  13  120....DIIDREADGSDSLEGFVLCH------------SIAGGTGSGLGSYLLERLNDRYPKKLDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNLIPTPRLHFLMTG............................ 272

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.