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Query: PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKALast
1 -8.2402p4d_A mol:protein length:172 Dual specificity protein phosphatase  ali model follow..  91............................................................................................................................................................................................................................................DDVTAFLSKEPVLVHCVAGVNRSGA--ILAYLMSKNKESSPMLYFLYVYHSMRDLRGA----FVENPSFKRQIIEKYVIDKN.... 172
2 -8.0201fpz_A mol:protein length:212 CYCLIN-DEPENDENT KINASE INHIBITOR 3  ali model follow..  54......................................................................................................................................................................KDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKT-HSYGGLGR--SCLVAACLLLYLSDTISPEQA------IDSLRDLRGSGAIQTIKQYNYLHEFRDKLAAHLSS 202
3 -7.5902d0w_A mol:protein length:170 cytochrome cL  ali model follow..  40..........................................................................................................................................................................................................................................PYVEVAGCLPKGEEIESCSGCHGHIGEGK---------NDSYWTYPKNTTDKGLFETGGANGMMGPHGQDLEL-LIAWIRHIQKDDVA 131
4 -7.3706btm_E mol:protein length:161 Alternative Complex III subunit E  ali model follow..  69..........................................................................................................................................................................................................................................PLTEEEKNSGKGKELFYCISCHGAAGNGKGKLVEREKFLGVPSYKDREITEGSIFHVETYGLNAMGSHANQLSAHERWVLKLKSQL.. 161
5 -7.3005xdh_A mol:protein length:86 Putative cytochrome c  ali model follow..  1...................................................................................................................................................................................................................................................GDIQKTDTCELCHGADGKGSEAGKQFGVPDFTSPDYQKSRTDAQMKESNGTKNPNFVKDLADLDPLVQLVRGFNGK... 86
6 -7.0702q05_A mol:protein length:195 Dual specificity protein phosphatase  ali model follow..  106............................................................................................................................................................................................................................................DDVTAFLSKEPVLVHCAAGVNRSGA--ILAYLMSKNKESLPMLYFLYVYHSMRDLRG-----FVENPSFKRQIIEKYVIDKNG... 188
7 -6.9805ncr_A mol:protein length:181 tyrosine phosphatase  ali model follow..  92............................................................................................................................................................................................................................................PALVKLLARKPTLVHSVAGVNRSGA--AMGYVMHKRLAENPTMTQPARFVYFLKTYYEIRDLFLENANFRYQLIKMFVCDSPS... 181
8 -6.8701mg2_D mol:protein length:155 CYTOCHROME C-L  ali model follow..  11  38..........................................................................................................................................................................................................................................VYNEDPEILPEAEELGMCSGCHGHYAEGKI--------NDAYWTYPGNETDVGLFSTGGATGQMGPMWGSLTL-TMAWVRHLYTGDPK 129
9 -6.8504hjj_H mol:protein length:348 Anti-IL12 Anti-IL18 DFab Heavy Chain  ali model follow..  13  1.......................................................................................................................................................................................................................................EVTLRESGPALVKPTQTLTTCTFSGFSLSKSVMGVSWIRQPGKALEWLAHIYWDDDKYYNPSLSARLTISKDTSKNQVVLTMTNMDPVDTA 93
10 -6.7601kmi_Z mol:protein length:214 Chemotaxis protein cheZ  ali model follow..  1..........................................................................................MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTS--------FTNAQLLKIMMAQDFQDLT--GQVIKRMMDVIQEIERQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSL.......... 212

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.