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Query: PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete), from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASAQAKQTVKVLEYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAAGGYITVALDQPIKNGKGSDIRILGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRFEITYYKPTVETGEIKTPYITIDNYIRWTASWTNPDGSKQTAEGWQPKNVYHKQSYWPAWEENDQITFRGARLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTFDLDWAVDSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGRITNLast
1 -6.8002x0k_A mol:protein length:338 RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBF  ali model follow..  11  15..............................................DNSAVTIGVFDGAIMVTFDPALAESFGIDGVLFTRELSGTSPEKYVEFLLEDTLHASHVVVGANGENAAGTADSLRQICQSRLTVDVIDLLDDEGVRISSTTVREFLSEGDVARANWALGRHFYVTGPVVRGAGRGGKELGFPTANQYFHDTVALPADGVYAGWLTILPTEAPVSGNMEPEVAYAAAISVGTNPTFGDEQRSVESFVLDRDADLYGHDVKVEFVDHVRAMEKFDSVEQLLEVMAKDVQKTRT 316
2 -6.7705wgg_A mol:protein length:453 Radical SAM domain protein  ali model follow..  8  112............KYCFASTGNFGGQRNMMSLEVGKKAIDFLISESGNRKNLEIDFFGGEPMMNFDKGIIENKNFRFTLTTNGLLLNDENIKYINENMQ-----NIVLSIDGRKEVNDRMRIDGSGCYDDILPKFKYVAESRNQDNYYVRGTFTREN-----MDFSNDVLHLADEGFRQISVEPVVAAKDSGYDLREEDLPRLFEEYEKLAYEYVKRRKEGNWFNFFHFMIDLTQGPCIVKRLTGCGSGHEYL----AVTPEG--------DIYPCHQFVGNEKFKMGNVKEGV..... 383
3 -6.2305d50_E mol:protein length:86 Anti-repressor protein  ali model follow..  13  28......................................................................................................................................................................................................................................................EDSHLMKLLRELDKDGFNVDGPLAELVALVNYVTSSQMTMQDLQTHLDYCAE 79
4 -6.0204p37_A mol:protein length:534 Putative poly(A) polymerase catalytic subunit  ali model follow..  15  480................................................................................................................................................................................................................................................KYRFKNTSGNKINLLFKIDERGN-----------ISEEISTEEAYITEDTTSINTTTD 530
5 -5.9803cq9_A mol:protein length:227 Uncharacterized protein lp_1622  ali model follow..  14  49.GDFDSIDAAELQTVKDALVGAIVVKPDQDHTDTQLAIKSIFEQLQPDEVHLYGATGG----RLDHLLANQWAPQIKLIDNSVRFFLPGDYQITKEADKRYLAFVPLMPMHLTLPDEKYQLDAAYNAYPIS....................................................................................................................................................................... 186
6 -5.9801szb_A mol:protein length:170 mannose binding lectin-associated serine protease-2 related protein, MAp19 (19kDa)  ali model follow..  18  9........................................................................................................................................................................................................................................EPVFGRLASPGFPGEYANDQERRWTLTPPGYRLRLYEYDFVKLSSGAKVLATLCGQESTD...... 81
7 -5.9703ukh_A mol:protein length:519 UDP-galactopyranose mutase  ali model follow..  7  1.........................................THPDISVDVLVIG--AGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTG-AVANTLPKEKTRFKVTKVN-VTLQDGTTIGYKKL--VST....... 267
8 -5.9106f1c_A mol:protein length:291 Complement C1r subcomponent  ali model follow..  12  6........................................................................................................................................................................................................................................QKLFGEVTSPLFPKPYPNNFETTTVITPTGYRVKLVFYDYVKISADKKSLGRFCGQLGSPLGN... 81
9 -5.7305ckq_A mol:protein length:276 Mannan-binding lectin serine protease 1  ali model follow..  10  1................................................HTVELNEMFGQIQ-GYPDSYPSDSEVTWNITVPEFRVQLYFMHFNLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSP---------------GSFMSVTFRSDFSNEERFTGFDAHYMAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSGNLFTQRTGTITSPDYPNPYPKSSECSYTIDEEGFMVTLHFEDYIKIKAGSKVWGPFCGEKSPE...... 246
10 -5.4903ute_A mol:protein length:513 UDP-galactopyranose mutase  ali model follow..  7  3.......................................AMTHPDISVDVLVIG--AGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGANTKPKTFDEWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPARGGTG-AVANTLPKEKTRFKVTKVN-VTLQDGTTIGYKKL--VST....... 271
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.