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Query: PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSSDLIRYDAMVYMYELQSAMVKSLast
1 -7.6101cku_A mol:protein length:85 PROTEIN (HIPIP)  ali model follow..  9  24.TKSERVAAARPGLPPEEQHC---------ANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKA...................................................................................... 84
2 -7.5801hip_A mol:protein length:85 HIGH POTENTIAL IRON PROTEIN  ali model follow..  9  24.TKSERVAAARPGLPPEEQHC---------ADCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKA...................................................................................... 84
3 -7.5801js2_A mol:protein length:89 high-potential iron protein  ali model follow..  8  28.TKSERVAAARPGLPPEEQHC---------ANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKA...................................................................................... 88
4 -7.5801noe_A mol:protein length:86 HIGH POTENTIAL IRON SULFUR PROTEIN  ali model follow..  8  25.TKSERVAAARPGLPPEEQHC---------ANCQFMQADAAGATDEWKGCQLFPGKLINVNGWSASWTLKA...................................................................................... 85
5 -7.5805zcy_A mol:protein length:99 Protein translation factor SUI1 homolog  ali model follow..  15  2..........................VPRIVNPLDEMLFKEVLKEQQRIKVYIERA-----------RYGKVKTIIEGI-----DEKEFDLEEIAKKLKAKLACGG--TAKNGRIELQGDHRDRIKKLLAELGFSEELIEVE............... 99
6 -7.5701b0y_A mol:protein length:85 PROTEIN (HIPIP)  ali model follow..  9  24.TKSERVAAARPGLPPEEQQC---------ANCQFMQADAAGATDEWKGCQLFPGKLINVNGWCASWTLKA...................................................................................... 84
7 -7.4402n8k_A mol:protein length:76 U33-theraphotoxin-Cg1b  ali model follow..  15  1..................SVTCGGKQCKPNSCCVQNSHGKGKDSPR--------HPLGKLNNPCE............................................................................................ 40
8 -7.4302d9n_A mol:protein length:77 Cleavage and polyadenylation specificity factor, 30 kDa subunit  ali model follow..  14  2.........SSGSSGEKTVVCWLRGLCKKGDQC-----LHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK................................................................................... 65
9 -7.2504fvj_A mol:protein length:133 Stomatin  ali model follow..  15  11.................................LIKVDMRTISFDIPPQEVLTKDSVTISVDGVVYYRVQNATLAVANITNADSATRLLAQTTLRNAL----GTKNLSQILSDREEIAHHMQSTLDDATDDWGIKVERVEIKDVKLPVQLQRAMAAE 130
10 -7.2403s2k_C mol:protein length:97 Dickkopf-related protein 1  ali model follow..  22  13..................SVCLRSSDCASGLCCARHFWSKICKP------------VLKEGQVCT............................................................................................ 47
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.