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Query: PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQNLast
1 -8.8401fpz_A mol:protein length:212 CYCLIN-DEPENDENT KINASE INHIBITOR 3  ali model follow..  8  58................................................................................................................................................................................................................................................................................................RNVQKDTEELKSCGIQD---------VFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKT-HSYGGLG-----RSCLVAACLLLYLSDTISPEQAID----SLRDLRGS-GAIQTIKQYNYLHEFRDKLAAHLSSRDS 205
2 -6.8102kk1_A mol:protein length:135 Tyrosine-protein kinase ABL2  ali model follow..  14  47.....................................................................................................................................................................................................................................................................................................................................................................LTEPVPNSQLVDTGHQLLDCS---GYVDCIPQTRNK-FAFRE-------VSKLELSLQELQVSSAAAGVPGTNPVLNNLLSCVQEISDVVQR... 129
3 -6.7001s7m_A mol:protein length:174 Hia  ali model follow..  20  104........................................................................................................................................................................................................................................................................................................................................................................AATVGDLRGLGWVIS---GSTEYHDQVRNANEVKFNVSGKTVNGRREITFELAKGEVVK................................. 171
4 -6.2405obz_B mol:protein length:167 Putative transcription factor  ali model follow..  8  107.........YKCPTCGKHFCIDCDVFA------HEVIHNCPGCQADMRPKQDASSNNIGPANGLNNV------VDGDAMVL................................................................................................................................................................................................................................................................................................................................................................................... 166
5 -6.1902p4d_A mol:protein length:172 Dual specificity protein phosphatase  ali model follow..  17  91.........................................................................................................................................................................................................................................................................................................................................................................DDVTAFLSKEPVLVHCVAGVN-----RSGAMILAYLMSKNKESSPMLYFLYVYHSMRDLRGAFV--ENPSFKRQIIEKYVIDK........ 171
6 -6.1504xxl_A mol:protein length:125 Cytochrome c class I  ali model follow..  13  25.........................................................................................................................................................................................................................................................................................................................................................................ASAAVDVDAAKSLNNCFKGPSYKK--------VAEKYRGKADAEAKLIHHVTSGEHEEEHKNINGKASPEAIKNLVDWILSLWSHPQFEK. 125
7 -6.1501ggp_A mol:protein length:234 PROTEIN (LECTIN 1 A CHAIN)  ali model follow..  9  4...................................................................................................................................................................................................................................................................................................ASYNADIKEERDAAEGP-------------------MAHGIPALNAGALDEARAYATVDSANTDEEVSVAVDVTNLAVVAYRAGS---DNTYGDMAQAAESGIASLNSKNPLARTLMVIEIQNNVDVSIETQSAFAADAAMISLENNWANLSALVQGSSGG 194
8 -6.0604wz3_B mol:protein length:215 E3 ubiquitin-protein ligase LubX  ali model follow..  9  57...........................................................................................................................................................................................................................................................................................NKSSILKWLETKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQTNYEKLKNRLVQNARVAARQKEYTEIPDIFLCPI--SKTLIKTPVITAQ---GKVYDQEALSN---------IATGNKDETGKKLSIDDVV---------VFDELYQQIKVYNFYRKREVQKNQ. 203
9 -6.0403wwl_A mol:protein length:54 OrfF  ali model follow..  5  5...................CPECGAELRLENPELGELVVCEDCGAELEVVGLD............................................................................................................................................................................................................................................................................................................................................................................................................... 38
10 -5.9803adr_A mol:protein length:261 Putative uncharacterized protein ST1585  ali model follow..  11  62....................................................................................................................................................................................................................................................................................................DHIGLLPELLQVYKAKVLVKSGFKKYLTS---EDGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRHARHHMSVLDFLFTGDSAGAYFNGVIDYKMYMESLK----RQIELKAHGGLVSPKIMEEHLKQMLSKEEIQINVDIG 236
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.