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Query: PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIFANLFKKQADADAKVVGNVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNIVLLAKKEPKHKDEEAKALast
1 -6.8601ksy_A mol:protein length:154 REPLICATION PROTEIN E1  ali model follow..  15  9...................................................LGLFKSLFLCSFHDTRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCS----LQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQ--PKIRGLSAALFWFKSSLSPATLKHGALPEWIRA...................... 143
2 -6.6601r9w_A mol:protein length:145 Replication protein E1  ali model follow..  10  6...................................................LAVFKDTYGLSFTDVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPFIL----AHIQCLDCKWGVLILALLRYKCGKSRLTVAKGLSTLLHVPETCMLIQ--PKLRSSVAALYWYRTGISNISEVMGDTPEWIQR...................... 140
3 -6.5701nkw_E mol:protein length:212 50S ribosomal protein L6  ali model follow..  16  62....................................................VPYNTELTVRQDGDQLLVERPSDAQKH-RALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGI------DKQLVGQVAANVRKVRKPDAYHGKGV----FVGEQIALKAGKAGATGGKG 210
4 -6.5102k9s_A mol:protein length:107 Arabinose operon regulatory protein  ali model follow..  17  10.....QYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA...................................................................................................................... 104
5 -6.5003lsg_A mol:protein length:103 Two-component response regulator yesN  ali model follow..  14  7...IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYRE...................................................................................................................... 103
6 -6.3604ttx_A mol:protein length:161 Centriole protein  ali model follow..  11  57......................................................................KQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQCILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFCQLPHITLAFR....................................... 158
7 -6.3404u2i_A mol:protein length:161 Centriole protein  ali model follow..  10  1...................GSMPLLLD----DGDPKAQTGFDLSTATTL-----FWRPVPVHVKQQDGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDEDILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFRRLPHITLAFR....................................... 158
8 -6.2904ttw_A mol:protein length:161 Centriole protein  ali model follow..  11  1...................GSMPLLLD----DGDPKAQTGFDLSTATTL-----FWRPVPVHVKQQDGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGCIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDCKQLPHITLAFR....................................... 158
9 -6.2603pyi_B mol:protein length:170 Spindle assembly abnormal protein 6  ali model follow..  12  1...................GSMTSKIAL----FDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQR---NETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNI................................................................................ 105
10 -6.2104tq7_A mol:protein length:161 Centriole protein  ali model follow..  11  57......................................................................KQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDEGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFKQLPHITLAFR....................................... 158

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.