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current user: public |
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Query: PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 | |||||||
# | Score | Template | Links and tools | %id | First | MSIFANLFKKQADADAKVVGNVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNIVLLAKKEPKHKDEEAKA | Last |
1 | -6.860 | 1ksy_A mol:protein length:154 REPLICATION PROTEIN E1 | ali model follow.. | 15 | 9 | ...................................................LGLFKSLFLCSFHDTRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCS----LQMQKRSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQ--PKIRGLSAALFWFKSSLSPATLKHGALPEWIRA...................... | 143 |
2 | -6.660 | 1r9w_A mol:protein length:145 Replication protein E1 | ali model follow.. | 10 | 6 | ...................................................LAVFKDTYGLSFTDVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPFIL----AHIQCLDCKWGVLILALLRYKCGKSRLTVAKGLSTLLHVPETCMLIQ--PKLRSSVAALYWYRTGISNISEVMGDTPEWIQR...................... | 140 |
3 | -6.570 | 1nkw_E mol:protein length:212 50S ribosomal protein L6 | ali model follow.. | 16 | 62 | ....................................................VPYNTELTVRQDGDQLLVERPSDAQKH-RALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGI------DKQLVGQVAANVRKVRKPDAYHGKGV----FVGEQIALKAGKAGATGGKG | 210 |
4 | -6.510 | 2k9s_A mol:protein length:107 Arabinose operon regulatory protein | ali model follow.. | 17 | 10 | .....QYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRA...................................................................................................................... | 104 |
5 | -6.500 | 3lsg_A mol:protein length:103 Two-component response regulator yesN | ali model follow.. | 14 | 7 | ...IQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLKNYEIAEQVGFEDVNYFITKFKKYYQITPKQYRE...................................................................................................................... | 103 |
6 | -6.360 | 4ttx_A mol:protein length:161 Centriole protein | ali model follow.. | 11 | 57 | ......................................................................KQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQCILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFCQLPHITLAFR....................................... | 158 |
7 | -6.340 | 4u2i_A mol:protein length:161 Centriole protein | ali model follow.. | 10 | 1 | ...................GSMPLLLD----DGDPKAQTGFDLSTATTL-----FWRPVPVHVKQQDGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDEDILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFRRLPHITLAFR....................................... | 158 |
8 | -6.290 | 4ttw_A mol:protein length:161 Centriole protein | ali model follow.. | 11 | 1 | ...................GSMPLLLD----DGDPKAQTGFDLSTATTL-----FWRPVPVHVKQQDGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGCIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDCKQLPHITLAFR....................................... | 158 |
9 | -6.260 | 3pyi_B mol:protein length:170 Spindle assembly abnormal protein 6 | ali model follow.. | 12 | 1 | ...................GSMTSKIAL----FDQTLIASLLQPLSLNQPDFKAYKTKVKLKISEQR---NETSGEKELKFEISRSDDFEFLFSETLNNEKYQILARDHDLTVDFDAFPKVIIQHLLCKNI................................................................................ | 105 |
10 | -6.210 | 4tq7_A mol:protein length:161 Centriole protein | ali model follow.. | 11 | 57 | ......................................................................KQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDEGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDFKQLPHITLAFR....................................... | 158 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |