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Query: PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg], from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAYLast
1 -33.6003e8v_A mol:protein length:82 Possible transglutaminase-family protein  ali model follow..  36  14PVADATVEFKVYNYAEFYTVATKHTDRSGHASLTAGKGDMLVWASKDGRFGYSKLSFGKDNELKITLDK............................................................................................................................................................................................ 82
2 -9.8905aq0_A mol:protein length:82 CARBOXYPEPTIDASE D  ali model follow..  14  15GLENATISVAGINHN-------ITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVVKEGPATEVDFSLRPH........................................................................................................................................................................................... 81
3 -9.4204zjg_A mol:protein length:349 alpha-2-Macroglobulin  ali model follow..  16  279AQQGIEV--SLLNEKG-QTLTQATSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYS....................................................................................................................................................................................... 349
4 -8.4602igl_A mol:protein length:118 Transthyretin-like protein  ali model follow..  20  22PAADVTVTLEKKADNGWLQLNTAKTDKDGRIK-TATTGDYRVVFKTGDYFKFHINKVNEHYHVPLLLSQ............................................................................................................................................................................................ 109
5 -8.2402gpz_A mol:protein length:111 transthyretin-like protein  ali model follow..  18  15PAPGVEVVLEQKKDNGWTQLNTGHTDQDGRIK-AAAPGDYRVIFKTGQYFEFHISKTNEHYHVPLLLSQ............................................................................................................................................................................................ 102
6 -7.8003qec_A mol:protein length:150 Putative carbohydrate binding protein  ali model follow..  22  88...................VREATTDQNGRFDFDIPNGTYYISSETEGGTVTKLVTVSGSQPQKVLLTR............................................................................................................................................................................................ 150
7 -7.7701xpn_A mol:protein length:170 hypothetical protein PA1324  ali model follow..  22  102...................VREATTDQNGRFDFDIPNGTYYISSETEGGTVTKLVTVSGSQPQKVLLTR............................................................................................................................................................................................ 164
8 -7.2602ww8_A mol:protein length:893 CELL WALL SURFACE ANCHOR FAMILY PROTEIN  ali model follow..  9  61LLGDAV--FELKNNTDGTTVSQRTEAQTGEAIFSIKPGTYTLTEAQPPV-GYKPVEVEKNGRTTVQGEQVENREEALSDQYPQTGTYPDVQTPYQIIKVDGSEKNGQHKALNPNPYERVIPEGTLSKRIYQVNNLD---------NQYGIELTVSGKTVYEQKDKSVPLDVVILLDNS............................................................................... 234
9 -7.2503lx2_A mol:protein length:259 DNA polymerase sliding clamp 2  ali model follow..  10  1....MTFEIVFDSAREFESLIATLEKFFDEAVFQVNMEGIQMRAIDPSRVVLVDLNLPEESEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLLGDENTWFKLPLIDANTPEIEIPSLPWTVKAVVLAGALKRAVKAAKLVSDSIYFMATPEKLTFKAEGNDSEVRTVLTMEDPGLLDLEHKMTKAKSAYGVAYLEDILRSLADADEVI-----IRFGFDIPLLLKYMVRDAGEVSFLIAPRVEEG..... 251
10 -7.2003txa_A mol:protein length:682 Cell wall surface anchor family protein  ali model follow..  11  5PLGKAT--FVLKNDNDKSETSHETVEGSGEATFEIKPGDYTLREETAPI-GYKK----TDKTWKVKVADNEGMDADKAEKRKEVLNAQYPKSAIYEDTKENYPLVNVEGSKVGEQYKALNPINGKDGRREIAEGWLSKKITGVNDLDKNKYKIELTVEGKTTVETKELNQPLDVVVLLDNSNSMNNERANNSQRALKAGEAVEKLIDKITSNK............................................ 216
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205