current user: public

If you have questions about the server, please let us know.

Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .
# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -26.1002key_A mol:protein length:112 Putative phage integrase  ali model follow..  16  1........................................................................................................................MNNPSDFKSFHDFVASYMKTYSRRLEIGTFRHHKSCMRKFKEYC-EGLQFHELTEDFLRDYLIYMKKT. 67
2 -11.5003nrw_A mol:protein length:117 Phage integrase/site-specific recombinase  ali model follow..  12  2..........................................................................................................................TERPSLSPREARDRYLAHRQTDAADASIKSFRYRLKHFVEWAEER-AMRELTGWKLDEYETFRRGS. 69
3 -10.6002kiw_A mol:protein length:111 Int protein  ali model follow..  1................................................................................................................................TFKQVADDWLKQYANDVKVSSVRAREKAIQHAIERFN-TKPIQTIKKHDYQRFVDDISAQ. 59
4 -10.6003lys_A mol:protein length:112 Prophage pi2 protein 01, integrase  ali model follow..  16  2...........................................................................................................................DPIKQEISEYFKDWMELYKKNADEMTYKGYEQTLKYLKTYMP-NVLISEITASSYQRALNKFAET. 66
5 -9.5602khq_A mol:protein length:110 Integrase  ali model follow..  13  2...............................................................................................................................ITFADYFYQWYEVNKLPHSESTKRHYESAYKHIKDHFR-HKLLKDIKRTEYQKFLNEYGLT. 62
6 -9.1302kd1_A mol:protein length:118 DNA integration/recombination/invertion protein  ali model follow..  10  2...........................................................................................................................EPSKLSYGEYLESWFNTKRHSVGIQTAKVLKGYLNSRIIPSLGNIKLAKLTSLHMQNYVNSLRDE. 66
7 -7.8002oxo_A mol:protein length:103 Integrase  ali model follow..  1...............................................................................................................................MTLHSWLDRYEKILASRGKQKTLINYMSKIKAIRRGLP-DAPLEDITTKEIAAMLNGYIDE. 61
8 -7.4302cr7_A mol:protein length:80 Paired amphipathic helix protein Sin3b  ali model follow..  14..................................................................................................................................LTYLDQVKIRFGSD------ATYNGFLEIMKEFKSQSIDTPGVHPDLIVGFNAFL---P 74
9 -7.2502czy_A mol:protein length:77 Paired amphipathic helix protein Sin3b  ali model follow..  6................................................................................................................................DALTYLDQVKIRFGSDPA-----TYNGFLEIMKEFKSQSIDTPGVHPDLIVGFNAFL.... 67
10 -7.2102rmr_A mol:protein length:71 Paired amphipathic helix protein Sin3a  ali model follow..  10  9..................................................................................................................................LSYLDQVKLQFGSQPQ-----VYNDFLDIMKEFKSQSIDTPGVHPDLIMGFNTFL---P 69

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.