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Query: PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMELLast
1 -15.1004zua_A mol:protein length:178 Exoenzyme S synthesis regulatory protein ExsA  ali model follow..  14  32.....................................................................VYVLLEGELTVQDIDST-FCLAPGELLFVRRGSYVVST---KGKDSRILWIPLS----AQFLQGFVQRFGALLSEVERCDEPVPGIIAFAATPLLAGCVKGLKELVHEHPPMLACLKIEEL 145
2 -10.9005onm_A mol:protein length:138 L-ectoine synthase  ali model follow..  15  2..............IVKHLEEIVDTKDDIDTKTWNSRRLLLTKGMGFSLNDTLIKAGTETLIWYKNHVEAVYCIEGEGEIEVIGGETYPITPGMMYA............................................................................................. 85
3 -10.8005onn_A mol:protein length:138 L-ectoine synthase  ali model follow..  15  2..............IVKHLEEIVDTKDDIDTTTWNSRRLLLTKGMGFSLNDTLIKAGTETLIWYKNHVEAVYCIEGEGEIEVVGGETYPITPGMMYA............................................................................................. 85
4 -10.7005ono_A mol:protein length:138 L-ectoine synthase  ali model follow..  15  2..............IVKHLEEIVDTKDDIDTTTWNSRRLLLTKGMGFSLNDTLIKAGTETLIWYKNHVEAVYCIEGEGEIEVVGGETYPITPGMMYA............................................................................................. 85
5 -10.6001xja_A mol:protein length:178 Arabinose operon regulatory protein  ali model follow..  10  1..........................MAEAQNDPLLPGYSFNAHLVAGLTPIEANGVLDFFIDRPLGMKLNLTIRGQGVVKN-QGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNR.... 178
6 -10.2005u93_A mol:protein length:172 HTH-type transcriptional activator RhaR  ali model follow..  11  35...............................................................THDFCELVIVWRGNGLHVL-NDRPYRITRGDLFYIHADD---KHSYASVNDLVLQNIIYCPERLKLNLDWQ-----GAIPGFNASAGQPHWRLGSMGMAQARQVIGQLEH-HVPFANEMAELLFGQL 155
7 -9.0402q30_A mol:protein length:110 Uncharacterized protein  ali model follow..  11  2MEAHMKSHNLLEAVRFDDQRFVMELVHESE--NFKIVSFTFKAGQELPVHSHNIEG------------LNIVVLEGEGEFVGDGDAVIPAPRGAVLV............................................................................................. 85
8 -8.7703es1_A mol:protein length:172 Cupin 2, conserved barrel domain protein  ali model follow..  9  77..........................................GGSVIRVVDMLPGKESPMHRTNS--IDYGIVLEGEIELELDDGAKRTVRQGGIIVQRGTNHLWRNTTDKPCRIAFILIEAPAYLHNG............................................................. 161
9 -8.5103l2h_A mol:protein length:162 Putative sugar phosphate isomerase  ali model follow..  10  11AQEISRMKGEHKVHFLNPGAVRVNKSLGDAVGLRHIHLIQIEPGKESTEYHLHHYE------------EAVYVLSGKGTLTM-ENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVI...................................................................... 120
10 -8.4705gnb_A mol:protein length:371 Spike glycoprotein  ali model follow..  19  313...................DVCVDYDLYGITGQGIFKEVSYYNSWQNLLYDSNGNIIGFKDFVTNKTYNIFPCYAG.................................................................................................................. 371
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.