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Query: PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGWKQYLast
1 -6.7605xjc_x mol:protein length:703 Protein CASC3  ali model follow..  8  65....................................ESGGAKSAEESECESEDGIEGDAVLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGEQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWDKFREDEQAPKSRQELIALY-------------------GYDIRS. 246
2 -6.5205mrw_C mol:protein length:187 Potassium-transporting ATPase KdpC subunit  ali model follow..  8  1LRPALSTFIFLLLITGGVYPLLT---------TVLGQWWFPWQANGSLIREGDTVRGSALIGQTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARVAALRAANPDASASVPVELVTAS----ASGLD-NNITPQAAAWQIPRVAKARNLSVEQLTQLIAKYSQQPLVKYI-----GQPVVNIVLNLALDKLDE.................... 187
3 -6.0304m5d_A mol:protein length:1237 U3 small nucleolar RNA-associated protein 22  ali model follow..  6  2..........................................................................ATSVKRKASETSDQNIVKVQKKHSTQDSTTDNGSKENDHSSQAINERTVPEQENDESDTSPESNEVATNTAATRHNGKVTATESYDIHIARETIFKLQIDELLEQVKLKQKHVLKVEKFLHKLYDILQEIPDWEEKSLAEVDS...... 151
4 -5.8704u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  8  24................................AKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKLQTIVDIKPEINPVYDSDDSDAETQNTGKRIMRPAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELELISKIQRNEQTD. 247
5 -5.8403v2w_A mol:protein length:520 Sphingosine 1-phosphate receptor 1, Lysozyme chimera  ali model follow..  6  222LFCTTVFTLLLLSIVILYCRIYSLVRTRN-------IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQGFTNSLRMLQQKRWDEAAVNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTV............................. 423
6 -5.7404f55_A mol:protein length:128 Spore cortex-lytic enzyme  ali model follow..  8  8....................................................................................................................................PNGYSQNDIQLMANAVYGESRGEPYLGQVAVAAVILNRVTSASFPNTVSGVIFEPRAFTAVADGQIYLTPNETAKKAVLD........... 87
7 -5.6605oql_X mol:protein length:630 Rrp9  ali model follow..  4  8....................................PASEKKRKRAATADAPKKRLATTKSSSKSGSKAPTKAAAPASKKKAIERDESISGSDLDSDLSGDDEFIERRSSDAGSGDESEKEGETAAEKRLRLAQ---LEKTRKEVEQLDEYAFDAEEIDRDLLAERLKEDVAKGKVYRRLASELAFDKATYTQFRWNSGTVTSVAVCPPYAYTTTKDGYLTKW 195
8 -5.6606epc_W mol:protein length:377 26S proteasome subunit S5a  ali model follow..  4  210.....................................................PSADPELALALRVSMEEQRQRQEEEARRAAAASAAEAGIATPGTEDSDDALLKMTISQQEFGRAGLPDLSSMTEEEQAYAMQMSLQGAEFGQAESGDIDASSAMDTSEPVKEEDDYDMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLASQATKDGKKDKKEEE...... 375
9 -5.4704fet_B mol:protein length:222 Spore cortex-lytic enzyme prepeptide  ali model follow..  7  31.............................................................GKVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKTKQMLVKATKYDKSTANKGNSGGTAQENKPSQNKGTNVPNGYSQNDIQMMANAVYGESRGEPYLGQVAVAAVILNRVTSASFPNTVSGVIFEPRAFTAVADGQIYLTPNETAKKAVLD........... 181
10 -5.4405gjq_S mol:protein length:534 26S proteasome non-ATPase regulatory subunit 3  ali model follow..  8  1...................................................................MKQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKA----VSGKEPRFVLRALRRLNHYVLYKAVQGFFTSNNATRDFLLPFLEEPMD.................... 140
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.