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Query: PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete), from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKGIDLast
1 -21.0003zg1_A mol:protein length:148 NICKEL AND COBALT RESISTANCE PROTEIN CNRR  ali model follow..  13  2MKSRRLSLSTLFGALLGVSVAAAWLYYSHRNEAGHGDLHEILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAEARAGLKPEHRPAYDRVLIDALRRGSQ. 148
2 -21.0004clv_A mol:protein length:148 NICKEL-COBALT-CADMIUM RESISTANCE PROTEIN NCCX  ali model follow..  13  2MKSRTLSVSTLVGALVGVLMAIVGVYVTHSTEEPHTSLHEMLHDAVPLDSNEREILELKEEEFTARRREIESRLRAANGKLAESIAKNPQEMRAGLKPEHRAAYDRVLVDALKRGSQ. 148
3 -20.2003o39_A mol:protein length:108 Periplasmic protein related to spheroblast formation  ali model follow..  18  4.......................................SGSFKDLNLTDAQKQQIREIMKGQRDQMEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLT..... 102
4 -20.1005ihf_A mol:protein length:116 VirG-like protein  ali model follow..  12  16.......................................DPIVQHLKLTNDQITRIKKLHQQLETDVSQISMKGIKDGAQARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE..... 116
5 -19.3002y3h_A mol:protein length:118 NICKEL AND COBALT RESISTANCE PROTEIN CNRR  ali model follow..  17  13.......................................EILHEAVPLDANEREILELKQDAFAQRRREIETRLRAANGKLADAIAKNPAEMRAGLKPEHRPAYDRVLIDALRRGSQ. 118
6 -19.2004wwb_A mol:protein length:118 Nickel and cobalt resistance protein CnrR  ali model follow..  16  13.......................................EILHEAVPLDANEREILELKEDAFAQRRREIETRLRAANGKLADAIAKNPAEMRAGLKPEHRPAFDRVLIDALRRGSQ. 118
7 -18.8005wnw_A mol:protein length:97 Periplasmic chaperone Spy  ali model follow..  20  3...........................................KDLNLTDAQKQQIREIMKGQRDQMEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLT..... 97
8 -18.8005wo1_A mol:protein length:97 Periplasmic chaperone Spy  ali model follow..  20  3...........................................KDLNLTDAQKQQIREIMKGQRDQMEAQIAKMEEQRKANMLALMETQNKIYNILTPEQKKQFNANFEKRLT..... 97
9 -18.8003qzc_A mol:protein length:117 Periplasmic protein CpxP  ali model follow..  11  9.......................................SHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLR.. 110
10 -17.1003itf_A mol:protein length:145 Periplasmic adaptor protein cpxP  ali model follow..  11  32.......................................SHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLR.. 133
11 -16.6003oeo_A mol:protein length:138 Spheroplast protein Y  ali model follow..  19  26.......................................DMMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRARKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERP.. 127
12 -16.1003lay_A mol:protein length:175 Zinc resistance-associated protein  ali model follow..  12  19MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGM----WQQGGSPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSVAMAQAGIPRGAGMGYGGCGGYGGGYH.. 158
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.