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Query: PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKSRIISLGLVASLVCLLPQVAEAQIAASNPLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSHWHRAAALVLast
1 -8.4604cgk_A mol:protein length:392 SECRETED 45 KDA PROTEIN  ali model follow..  10  1MKKKILASLLLSTVMVSQVAVLTT--------------AHAETTDDKIAAQDNKISNLTAQQQEAQKQVDQIQEQVSAIQAEQSNLQAENDRLAESKKLEGEITELSKNIVSRNQSLEKQARSAQTNGAVTS-YINTIVNSKSITEAISRVMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALT...................................... 190
2 -7.9505aqf_B mol:protein length:118 BAG FAMILY MOLECULAR CHAPERONE REGULATOR 1  ali model follow..  5  12...................................................................................VELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKATIEQFMKILEEIDTLILPENFKDS--RLKRKGLVKKVQAFLAECDTVEQNICQETE...................................... 118
3 -7.6605y05_A mol:protein length:262 msmeg_4306  ali model follow..  12  15MKAEVSQQRSLLTLSEVDAELARIAHRGKNLAEQKRLDELTAQRGEVNDRLAALGIALEDLDAQVAKYESEIDSVRQREDRDRALLEGGSVGAKQVTEIQHELETLQRRQASLLEVMERREELMAERSEELRRVDELQTELTEAQQARDAALVELDQARHQCATRRDALVNAIDDQLEKQRARGGAGAGPLQGRRCGACRIEIDRGEIARITAAADDDVVR......... 243
4 -7.2105h69_A mol:protein length:261 Chromosome partition protein Smc  ali model follow..  7  5.........................................AAQKTELEQHEALLHQARQYRQQTKARQQWLEEMQHDYSGFVQGVKEVLKARDLLPGIHGAIVELIRVPDRYETAIE-----TALGGAMQHIVVDSEQAARQAIHYLKTNGYGRATFLPLDVIKARALSERERAAIDRHPAFVGIASELVEYRAYRAAIAHLLGHVIVTADLKGANELAKLLHYRYRLV 189
5 -7.0901kmi_Z mol:protein length:214 Chemotaxis protein cheZ  ali model follow..  7  52........................................RDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLADARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLM............................................................................ 165
6 -7.0105c3l_C mol:protein length:150 Nucleoporin Nup62  ali model follow..  12  18..........................................................AQLENLINKWSLELEDQEKHFLQQATQVNALMQNGERITTLHREMEKVKLDQKRLDQELD----------FILSQQKELEDLLTPLEESVKEQSGTIYLQHADEEREKTKLAENIDAQLKRMAQDLKEVIEHLNTSA................................... 149
7 -6.8906ek7_A mol:protein length:410 YaxA  ali model follow..  8  181.........................................GDINRHQTTTENVRKKVSDYRITLTGGELSSGDKVNGLEPQVKTKYDLMEKSNMRKSIKELDEKIKEKRQRIEQLKKDYDKMAITGGIFGAKAENARKEKNALISEVAELESKVSSQRAL-----QTALEALSLSFSDIGIRMVDAESALN--HLDFMWLSVLNQ-ITESQIQFFQQVITPWQSVGDSA 391
8 -6.8505ghe_A mol:protein length:428 Pesticidal crystal protein Cry6Aa  ali model follow..  10  187.........................................KEAKQYEEAAKNIVTSLDQFLHGDQKKLEGVINIQKRLKEVQTALNQAHGESSPHKELLEKVKNLKTTLERTIKAEQDLEKKVEYSFLLGPLLGFVVTAVQHIKNQIDEIKLDSAQHDLDRDVKIIGMLNSINTDIDNLYSQGQEAIKVFQ--KLQGIWATIGAQ-IENLRTTSLEDASDAWLVVAQEA 397
9 -6.8106gy6_A mol:protein length:424 XaxA  ali model follow..  6  178........................................KKDIKRQQENTQKVKTAVSDFKLKLIGGELSDGTIAQGLQPQISSKKKLMDDNNLSTTIKDLQSKIDEKNKEIDQFQKDYNKYVGLAF-FGDKAEKARKQKNKLIDEVKDLQSQVKDKSAL-----QTSVQNLSLSFAGIHTSMVDAEEALN--HLDFMWNTMLTQ-ITTSRDKFFKQVIEPWRDVQGSA 389
10 -6.7804f7g_B mol:protein length:216 Talin-1  ali model follow..  5  66........................................LTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAAS----AAGVVGGMVDSITQAINQLDE................................................ 203
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Godzik A. Secondary structure prediction using segment similarity. Protein Eng. 1997 Oct;10(10):1143-53.