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Query: PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;, from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNNLast
1 -7.0604u7a_A mol:protein length:826 Ribosome biogenesis protein ERB1  ali model follow..  11  5........................LEVLFQGPGMMAKNNKTTEAKMSKKRAASEESDVEEDEDKLLSVDGLIDAEASESDEDDDEYESAVEEKESSSDKEAQDDSDDDSDAELNKLLAEEEGDGEEDYDSSEFSDDTTSLTDRLSGVKL-ADGSDRIIKPEINPVYDSDDSDAETQNTIGNI-YDINGKRIMR--------PAKGSALDQLLDSIELPEGWTGLLDKNSGSSLNLTKEELEL... 236
2 -6.4405xjc_x mol:protein length:703 Protein CASC3  ali model follow..  12  59.........................................LHLRRVESGGAKSAEESECESEDGIEGDA-VLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKEHDKFR------EDEQAPKSRQELIALY-----------------------GYDIRS. 246
3 -5.9203v2w_A mol:protein length:520 Sphingosine 1-phosphate receptor 1, Lysozyme chimera  ali model follow..  10  220...YILFCTTVFTLLLLSIVI--------YCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVARMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVL................................. 427
4 -5.9004m5d_A mol:protein length:1237 U3 small nucleolar RNA-associated protein 22  ali model follow..  4..........................................................................SVKRKASETSDQNIVKVQKKHSTQDSTTDNGSKENDHSSQAINERTVPEQENDESDTSPESNEVATNTAATRHNGKVTATESYDIHIA----------RETAELFKSNIFKLQIDELLEQVKLKQKHVLKVEKFLHKLYDILQEIPDWEEKSLAEVDS............. 151
5 -5.8801wif_A mol:protein length:126 RIKEN cDNA 4930408O21  ali model follow..  10  37......................................................................................................................................................NLGLGLVVIQNISHLINKGAAASDGILQPGDVLISVGHANVLREFLKLLQNITIGTVLQIKAYRGFLEIPQEWQDSGPSS............... 125
6 -5.8306ez4_A mol:protein length:135 RNA polymerase II-associated protein 3  ali model follow..  52.....................................................................................................................................................FQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQRLSELKRFDMAVMFMSETE-KKIARALFNHIDKSGLKDSSVEE.................. 128
7 -5.7402qzv_A mol:protein length:873 Major vault protein  ali model follow..  689.....................................AQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKLLQSLGLKST--LITDGSSPINLFSTAFGLLGLGSDG........................... 867
8 -5.6401ug3_A mol:protein length:339 eukaryotic protein synthesis initiation factor 4G  ali model follow..  15  2......................................................................................................................................................KAALSEEELEKKSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGRSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEID.. 100
9 -5.5504aco_A mol:protein length:956 CENTROMERE DNA-BINDING PROTEIN COMPLEX CBF3 SUBUNIT A  ali model follow..  605...........................................EKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADSSDESSTESNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMDQFELKINAL------LDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFD....... 794
10 -5.4705h0q_A mol:protein length:202 Lipid binding protein  ali model follow..  3.....................................................................................................................................................YGVEIDEQYLRVMEEYKDKEVITQADMAKVALQRKNVYQDQAEKRQAELKAEYGVGVCVLVRVYNATGG........................... 71

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24