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Query: PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete), from HGM_OVER

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSVLast
1 -50.2004ygu_A mol:protein length:184 putative adhesin  ali model follow..  21  1........................GQDAKESEVRKVDAFSSIEITSVGT-----------------IHFTQSDTYSFRIEGREKYVKNTETTVKDGRLLIGFKDKKNKQKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLDEVSFEVKGVGEVNVA-DLTCNVLKVALRGVGSADIHV-VCDYLSAQMGGVGSVTLSGSAGRADISK 169
2 -47.9003lyc_A mol:protein length:241 Putative pectinase  ali model follow..  27  1.......................GGDGNITTENIPVSEYDCLELEGGGMV---------------VNYTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFRKRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSI 174
3 -46.5003pet_A mol:protein length:221 Putative adhesin  ali model follow..  17  1..................GGEGIQPSKKLITRDYKVKEFNKIDAGTVGN-----------------IYYTQSTKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNAT-ESIDAAV 193
4 -46.1003jx8_A mol:protein length:250 Putative lipoprotein  ali model follow..  32  2.................AADKRIDGNGNPETREIKISDYDEITFVGSAD-----------------FEYEQSDKPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNV 184
5 -45.7004opw_A mol:protein length:241 Uncharacterized protein  ali model follow..  32  1..................GADHVKGNGKLSTKKITIDDFNAIKFDGVID-----------------FNYEQSETPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLAGNAEEADYSI 175
6 -45.2003ljy_A mol:protein length:243 putative adhesin  ali model follow..  31  2..................AADHVKGDGKLTSKKISVADYNEIKVDGVID-----------------FNYEQSDDPSVEVTVDQNLHPYVNIEVKDRVLTIAFKGAKVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKGNAKEGDYSI 176
7 -7.1704xin_A mol:protein length:126 LpqH orthologue  ali model follow..  10  10.......................................................................SSTASVTVDGKDRNFHIVTCRQLEWRRMIDIGADFSGAKVAVDENAQPPVVESVHIQNLSGF---------SGMYSRGGSGSADMSMTGDKFTISGTADGYKTDKPGEPATATFKIVVT.................. 119
8 -7.1005xmz_A mol:protein length:155 Effector protein PevD1  ali model follow..  12  1MQFTLAAAAALFGASALAAGSTGAPPDPNMYENIDIADFNVRKGEDGTIKYV-------------NFKLSGDDADGLLCEAQNPGLPSNVITCGESKYRFALSSG---KQYEFALSLYHELGLAVGFYGTGEI---------FTHCRAGGLGDFICQ---QQNPTTIVIDSL.................................... 148
9 -6.9204upf_D mol:protein length:115 ATPASE RAVA  ali model follow..  15  2...................................................................HMQQSDKTALTVIRLGGIFSRLPVNVTASTLTLLLQKPLKLHDMEV-VHIS--------------------FERSALEQWLSKGGEIRGKLNG-AQKLNLEVDSAQHLVVRDVSLQGSTLALPGSSA.............. 114
10 -6.6405nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  6  1MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLLVN-ARAAHTNGEESINMDAEDFEDRVHSLAMLVFDSNTGEKIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQV----------FRDLDPIHYHNATNNNGFPMSRMYSNQTVTIGGTITQPLPFKPDGENNVKLQ-VAKLDVNIVEGVENLQ. 205
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.