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current user: public |
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Query: PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete), from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . | |||||||
# | Score | Template | Links and tools | %id | First | MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSV | Last |
1 | -50.200 | 4ygu_A mol:protein length:184 putative adhesin | ali model follow.. | 21 | 1 | ........................GQDAKESEVRKVDAFSSIEITSVGT-----------------IHFTQSDTYSFRIEGREKYVKNTETTVKDGRLLIGFKDKKNKQKDGVTIWISAPDLKEVEFTGVGEFNCEKPLKLDEVSFEVKGVGEVNVA-DLTCNVLKVALRGVGSADIHV-VCDYLSAQMGGVGSVTLSGSAGRADISK | 169 |
2 | -47.900 | 3lyc_A mol:protein length:241 Putative pectinase | ali model follow.. | 27 | 1 | .......................GGDGNITTENIPVSEYDCLELEGGGMV---------------VNYTQSDAPEGLEIKTDRNIFEKYEFNVENHKLKIRPKKEFRKRPTEFMVTANSRNLKKLAAAGSTHVNINSPLQAEEFEAGLAGSGIIQFHDTASFTNLKIEIAGSGDFVGHKVYCEELNGDMAGSNTIVLGGTVGIAEFSI | 174 |
3 | -46.500 | 3pet_A mol:protein length:221 Putative adhesin | ali model follow.. | 17 | 1 | ..................GGEGIQPSKKLITRDYKVKEFNKIDAGTVGN-----------------IYYTQSTKTDLQIYGPDNIVALIQVAVKDNTLFLSIDKSKKVRNKKMKITITSPTLNGISFKGVGDVHIENGLTTDNLDIESKGVGNVDVKLEGTAQIAALHSKGVGNIEAGNLRANAVEASSQGVGDITCNAT-ESIDAAV | 193 |
4 | -46.100 | 3jx8_A mol:protein length:250 Putative lipoprotein | ali model follow.. | 32 | 2 | .................AADKRIDGNGNPETREIKISDYDEITFVGSAD-----------------FEYEQSDKPYLSVTIDENLFDYLVTEVEGGTLKIYPKSIKKLRPTVYKIKSNSKELKELNTVGSGSFIISKPTKVNRMEINMAGSGNVELRGPVKGYKLECNMAGSGNIIAKDIQLDNLSCSLASSGEIEVIGTVDRASFNV | 184 |
5 | -45.700 | 4opw_A mol:protein length:241 Uncharacterized protein | ali model follow.. | 32 | 1 | ..................GADHVKGNGKLSTKKITIDDFNAIKFDGVID-----------------FNYEQSETPHIEITVDENLHPYVNIDIQDRVLTVGFKGAKVDHFTKFIVKTNSKWLKEVKASGNANFIANSPLKGDELKINANSNCLVQLKQKVEVGKLDLNVSGSANMVVNELKTDKLECSINGSGTINLAGNAEEADYSI | 175 |
6 | -45.200 | 3ljy_A mol:protein length:243 putative adhesin | ali model follow.. | 31 | 2 | ..................AADHVKGDGKLTSKKISVADYNEIKVDGVID-----------------FNYEQSDDPSVEVTVDQNLHPYVNIEVKDRVLTIAFKGAKVDHFTKFIVKTNSKWLAAAKVSGNANFMVNSPLTGDETVIKANANSLVQLKETVTVGKLDLNVSGSANMVVNHLEADKIECDIDGSGSITIKGNAKEGDYSI | 176 |
7 | -7.170 | 4xin_A mol:protein length:126 LpqH orthologue | ali model follow.. | 10 | 10 | .......................................................................SSTASVTVDGKDRNFHIVTCRQLEWRRMIDIGADFSGAKVAVDENAQPPVVESVHIQNLSGF---------SGMYSRGGSGSADMSMTGDKFTISGTADGYKTDKPGEPATATFKIVVT.................. | 119 |
8 | -7.100 | 5xmz_A mol:protein length:155 Effector protein PevD1 | ali model follow.. | 12 | 1 | MQFTLAAAAALFGASALAAGSTGAPPDPNMYENIDIADFNVRKGEDGTIKYV-------------NFKLSGDDADGLLCEAQNPGLPSNVITCGESKYRFALSSG---KQYEFALSLYHELGLAVGFYGTGEI---------FTHCRAGGLGDFICQ---QQNPTTIVIDSL.................................... | 148 |
9 | -6.920 | 4upf_D mol:protein length:115 ATPASE RAVA | ali model follow.. | 15 | 2 | ...................................................................HMQQSDKTALTVIRLGGIFSRLPVNVTASTLTLLLQKPLKLHDMEV-VHIS--------------------FERSALEQWLSKGGEIRGKLNG-AQKLNLEVDSAQHLVVRDVSLQGSTLALPGSSA.............. | 114 |
10 | -6.640 | 5nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3 | ali model follow.. | 6 | 1 | MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLLVN-ARAAHTNGEESINMDAEDFEDRVHSLAMLVFDSNTGEKIGSGTSTYVFTVKLKPGQRDFFFVANIPNMQTAMASIVNKSDMNHFMQV----------FRDLDPIHYHNATNNNGFPMSRMYSNQTVTIGGTITQPLPFKPDGENNVKLQ-VAKLDVNIVEGVENLQ. | 205 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16. |